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3D Deconvolution Microscopy
BIG >  3D Deconvolution Microscopy
DECONVOLUTION

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Open Software

» DeconvolutionLab2

» DeconvolutionLab

» PSF Generator

3D Reference Datasets

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Simulation of Microtubules

This datasets is a realistic-looking synthetic dataset representing a network of microtubules in a cell. It corresponds the GFP channel of the dataset used for the challenge on 3D deconvolution microscopy. The ground-truth, the PSF and some results are freely accessible upon a request by email.

Download

Object File Description Size Mb
Ground-truth reference.zip Reference dataset, simulation 256x128x128, 32 bits 67Mb
Simulation simulation.zip Test volume, reference convolves with the PSF, plus noise 256x128x128, 32 bits 33Mb
PSF psf.zip Point-Spread Function 256x128x128, 32 bits 33Mb

Reference

[1] D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, M. Unser, "DeconvolutionLab2 : An Open-Source Software for Deconvolution Microscopy" Methods, in press, 2017.

Conditions of use

You'll be free to use this software for research purposes, but you must not transmit and distribute it without our consent. In addition, you undertake to include a citation whenever you present or publish results that are based on it. EPFL makes no warranties of any kind on this software and shall in no event be liable for damages of any kind in connection with the use and exploitation of this technology.

© 2017 EPFL • webmaster.big@epfl.ch • 07.04.2017