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DeconvolutionLab2

v1.0
A B C D E F G H I J K L M N O P R S T U V W X Y Z 

A

abort() - Method in class deconvolution.algorithm.Controller
 
abort() - Method in class deconvolution.Deconvolution
 
AboutModule - Class in deconvolutionlab.module
 
AboutModule() - Constructor for class deconvolutionlab.module.AboutModule
 
abs() - Method in class signal.RealSignal
 
AbstractApodization - Class in signal.apodization
 
AbstractApodization() - Constructor for class signal.apodization.AbstractApodization
 
AbstractApodization(double) - Constructor for class signal.apodization.AbstractApodization
 
AbstractCapsule - Class in deconvolution.capsule
 
AbstractCapsule(Deconvolution) - Constructor for class deconvolution.capsule.AbstractCapsule
 
AbstractDropDownButton - Class in deconvolutionlab.module.dropdownbuttons
 
AbstractDropDownButton(String, String, boolean) - Constructor for class deconvolutionlab.module.dropdownbuttons.AbstractDropDownButton
 
AbstractImageSelectionModule - Class in deconvolutionlab.module
 
AbstractImageSelectionModule(String) - Constructor for class deconvolutionlab.module.AbstractImageSelectionModule
 
AbstractMeter - Class in deconvolutionlab.system
 
AbstractMeter(int) - Constructor for class deconvolutionlab.system.AbstractMeter
 
AbstractModule - Class in deconvolutionlab.module
 
AbstractModule() - Constructor for class deconvolutionlab.module.AbstractModule
 
AbstractMonitor - Interface in deconvolutionlab.monitor
 
AbstractPadding - Class in signal.padding
 
AbstractPadding() - Constructor for class signal.padding.AbstractPadding
 
AbstractRange - Class in signal.range
 
AbstractRange(Monitors) - Constructor for class signal.range.AbstractRange
 
AbstractWavelets - Class in wavelets
 
AbstractWavelets() - Constructor for class wavelets.AbstractWavelets
 
AbstractWavelets(int) - Constructor for class wavelets.AbstractWavelets
 
ack - Static variable in class DeconvolutionLab2
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.FISTAPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.ICTMPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.ISTAPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
actionPerformed(ActionEvent) - Method in class deconvolution.capsule.ResourcesCapsule
 
actionPerformed(ActionEvent) - Method in class deconvolution.DeconvolutionDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.dialog.OutputDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.LabDialog
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.LabPanel
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.AbstractModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.AlgorithmModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.BatchModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.CommandModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.ComputationModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.ControllerModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.DirectoryModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.dropdownbuttons.AddOutputDropDownButton
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.dropdownbuttons.ChooseImageDropDownButton
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.dropdownbuttons.ShowImageDropDownButton
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.LanguageModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.OutputModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.PreprocessingModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.module.ResourcesModule
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.monitor.TableMonitor
 
actionPerformed(ActionEvent) - Method in class deconvolutionlab.system.SystemInfo
 
actionPerformed(ActionEvent) - Method in class imagej.IJImager.Dialog
 
actionPerformed(ActionEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
activate() - Static method in class deconvolutionlab.system.SystemInfo
 
active(AbstractModule[], CommandModule, LanguageModule) - Static method in class deconvolution.Command
 
add(String, String) - Method in class deconvolution.Features
 
add(RealSignal, int) - Method in class deconvolution.Stats
 
add(RealSignal, String, String, double, double, double) - Method in class deconvolution.Stats
 
add(Message) - Method in interface deconvolutionlab.monitor.AbstractMonitor
 
add(Message) - Method in class deconvolutionlab.monitor.ConsoleMonitor
 
add(Message) - Method in class deconvolutionlab.monitor.RunningMonitor
 
add(Message) - Method in class deconvolutionlab.monitor.StatusMonitor
 
add(Message) - Method in class deconvolutionlab.monitor.TableMonitor
 
add(int, String[]) - Method in class deconvolutionlab.system.AbstractMeter
 
add(Message) - Method in class imagej.IJMonitor
 
add(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
addFromActive() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
addFromDirectory(String) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
addFromFile(String) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
addFromPlatform() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
addFromSynthetic(boolean, String) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
addInput(RealSignal) - Method in class deconvolution.Stats
 
addJob(String, String) - Method in class deconvolutionlab.module.BatchModule
 
addMonitor(TableMonitor) - Method in class deconvolution.DeconvolutionDialog
 
addOutput(Output) - Method in class deconvolution.algorithm.Algorithm
 
addOutput(Output) - Method in class deconvolution.algorithm.Controller
 
addOutput(RealSignal, String, String, double, double, double) - Method in class deconvolution.Stats
 
addOutput(Output) - Method in class deconvolutionlab.module.OutputModule
 
AddOutputDropDownButton - Class in deconvolutionlab.module.dropdownbuttons
 
AddOutputDropDownButton(String, String, OutputModule) - Constructor for class deconvolutionlab.module.dropdownbuttons.AddOutputDropDownButton
 
addSplitButtonActionListener(SplitButtonActionListener) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Adds an SplitButtonActionListener to the button.
addStats(Stats) - Method in class deconvolution.DeconvolutionDialog
 
addTable(Signal, int) - Static method in class signal.SignalCollector
 
Airy - Class in signal.factory
 
Airy(double, double, double, double) - Constructor for class signal.factory.Airy
 
Algorithm - Class in deconvolution.algorithm
This class is the common part of every algorithm of deconvolution.
Algorithm() - Constructor for class deconvolution.algorithm.Algorithm
 
Algorithm(Controller) - Constructor for class deconvolution.algorithm.Algorithm
 
AlgorithmCapsule - Class in deconvolution.capsule
This class is a information module for the algorithm.
AlgorithmCapsule(Deconvolution) - Constructor for class deconvolution.capsule.AlgorithmCapsule
 
AlgorithmList - Class in deconvolution.algorithm
 
AlgorithmList() - Constructor for class deconvolution.algorithm.AlgorithmList
 
AlgorithmModule - Class in deconvolutionlab.module
 
AlgorithmModule() - Constructor for class deconvolutionlab.module.AlgorithmModule
 
AlgorithmPanel - Class in deconvolution.algorithm
This is the abstract panel class associated the algorithm.
AlgorithmPanel() - Constructor for class deconvolution.algorithm.AlgorithmPanel
 
alloc(Signal) - Static method in class signal.SignalCollector
 
amplitude - Variable in class signal.factory.SignalFactory
 
analysis(RealSignal, RealSignal) - Method in class wavelets.AbstractWavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.AbstractWavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.haar.HaarWavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline1Wavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline3Wavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline5Wavelets
 
analysis1(RealSignal, RealSignal) - Method in class wavelets.spline.SplineWaveletsTool
 
Apodization - Class in signal.apodization
 
Apodization() - Constructor for class signal.apodization.Apodization
 
Apodization(AbstractApodization, AbstractApodization, AbstractApodization) - Constructor for class signal.apodization.Apodization
 
Apodization(String, String, String) - Constructor for class signal.apodization.Apodization
 
apodize(float, float) - Method in class signal.apodization.AbstractApodization
 
apodize(Monitors, RealSignal) - Method in class signal.apodization.Apodization
 
apodize(float, float) - Method in class signal.apodization.HammingApodization
 
apodize(float, float) - Method in class signal.apodization.HannApodization
 
apodize(float, float) - Method in class signal.apodization.RaisedCosineApodization
 
apodize(float, float) - Method in class signal.apodization.TukeyApodization
 
apodize(float, float) - Method in class signal.apodization.UniformApodization
 
apodize(float, float) - Method in class signal.apodization.WelchApodization
 
append(String) - Method in class bilib.component.HTMLPane
 
append(String, String) - Method in class bilib.component.HTMLPane
 
append(Object[]) - Method in class bilib.table.CustomizedTable
Add a row at the end of the table.
append(Imager.ContainerImage, RealSignal, String, Imager.Type) - Method in class deconvolutionlab.Imager
 
append(Imager.ContainerImage, RealSignal, String, Imager.Type, ArrayList<Line2D.Double>) - Method in class deconvolutionlab.Imager
 
append(Monitors, Imager.ContainerImage, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
append(Monitors, Imager.ContainerImage, RealSignal, String, Imager.Type) - Static method in class deconvolutionlab.Lab
 
append(Monitors, Imager.ContainerImage, RealSignal, String, Imager.Type, ArrayList<Line2D.Double>) - Static method in class deconvolutionlab.Lab
 
append(Imager.ContainerImage, RealSignal, String, Imager.Type) - Method in class imagej.IJImager
 
append(Imager.ContainerImage, RealSignal, String, Imager.Type, ArrayList<Line2D.Double>) - Method in class imagej.IJImager
 
append(Imager.ContainerImage, RealSignal, String, Imager.Type) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
append(Imager.ContainerImage, RealSignal, String, Imager.Type, ArrayList<Line2D.Double>) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
apply(RealSignal, Constraint.Mode) - Method in class signal.Constraint
 
apply(RealSignal) - Method in class signal.range.AbstractRange
 
apply(RealSignal) - Method in class signal.range.ClippedRange
 
apply(RealSignal) - Method in class signal.range.IdentityRange
 
apply(RealSignal) - Method in class signal.range.NonNegativeRange
 
apply(RealSignal) - Method in class signal.range.NormalizedRange
 
apply(RealSignal) - Method in class signal.range.RescaledRange
 
Assessment - Class in signal
 
Assessment() - Constructor for class signal.Assessment
 
Astigmatism - Class in signal.factory
 
Astigmatism(double, double) - Constructor for class signal.factory.Astigmatism
 
authors - Static variable in class deconvolutionlab.Constants
 
AxialDiffractionSimulation - Class in signal.factory
 
AxialDiffractionSimulation(double, double, double) - Constructor for class signal.factory.AxialDiffractionSimulation
 

B

BatchDialog - Class in deconvolutionlab.dialog
 
BatchDialog(BatchModule) - Constructor for class deconvolutionlab.dialog.BatchDialog
 
BatchModule - Class in deconvolutionlab.module
 
BatchModule() - Constructor for class deconvolutionlab.module.BatchModule
 
Bessel - Class in bilib.tools
 
Bessel() - Constructor for class bilib.tools.Bessel
 
BesselJ0 - Class in signal.factory
 
BesselJ0(double, double, double, double) - Constructor for class signal.factory.BesselJ0
 
bilib.component - package bilib.component
 
bilib.table - package bilib.table
 
bilib.tools - package bilib.tools
 
binomialArray(double, int, int) - Method in class bilib.tools.PsRandom
 
bitArray(int) - Method in class bilib.tools.PsRandom
 
bnAction - Variable in class deconvolutionlab.module.AbstractModule
 
bnExpand - Variable in class deconvolutionlab.module.AbstractModule
 
bnSynopsis - Variable in class deconvolutionlab.module.AbstractModule
 
bnTitle - Variable in class deconvolutionlab.module.AbstractModule
 
BorderToggledButton - Class in bilib.component
 
BorderToggledButton(String) - Constructor for class bilib.component.BorderToggledButton
 
browseDirectory(String) - Static method in class bilib.tools.Files
 
browseFile(String) - Static method in class bilib.tools.Files
 
buildCollapsedPanel() - Method in class deconvolutionlab.module.AbstractModule
 
buildCommand() - Static method in class deconvolution.Command
 
buildExpandedPanel() - Method in class deconvolutionlab.module.AboutModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.AbstractModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.AlgorithmModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.BatchModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.CommandModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ComputationModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ConfigModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ControllerModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.DirectoryModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ImageModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.LanguageModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.LicenceModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.OutputModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.PreprocessingModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.PSFModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ReferenceModule
 
buildExpandedPanel() - Method in class deconvolutionlab.module.ResourcesModule
 
button1 - Variable in class deconvolutionlab.module.AbstractModule
 
button2 - Variable in class deconvolutionlab.module.AbstractModule
 
buttonClicked(ActionEvent) - Method in interface deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.SplitButtonActionListener
Invoked when the button part is clicked.
ButtonRenderer() - Constructor for class bilib.table.CustomizedTable.ButtonRenderer
 
BVLS(Object, Object, double, double) - Static method in class DL2
 
BVLS(Object, Object, double, double, String) - Static method in class DL2
 
BVLS(Object, Object, Object, double, double, String) - Static method in class DL2
 
bytes(double) - Static method in class bilib.tools.NumFormat
 

C

call() - Method in class deconvolution.algorithm.Convolution
 
call() - Method in class deconvolution.algorithm.FISTA
 
call() - Method in class deconvolution.algorithm.ICTM
 
call() - Method in class deconvolution.algorithm.Identity
 
call() - Method in class deconvolution.algorithm.ISTA
 
call() - Method in class deconvolution.algorithm.Landweber
 
call() - Method in class deconvolution.algorithm.LandweberPositivity
 
call() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
call() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
call() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
call() - Method in class deconvolution.algorithm.RichardsonLucy
 
call() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
call() - Method in class deconvolution.algorithm.Simulation
 
call() - Method in class deconvolution.algorithm.StarkParker
 
call() - Method in class deconvolution.algorithm.TikhonovMiller
 
call() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
call() - Method in class deconvolution.algorithm.VanCittert
 
card - Variable in class deconvolutionlab.module.AbstractModule
 
center(double, double, double) - Method in class signal.factory.SignalFactory
 
changeSizeAs(RealSignal) - Method in class signal.RealSignal
 
check() - Static method in class deconvolutionlab.Config
 
checkFFT(Monitors) - Static method in class deconvolutionlab.Lab
Checks the installed FFT libraries on a small (40, 30, 20) signal.
checkOutput() - Method in class deconvolution.Deconvolution
 
ChooseImageDropDownButton - Class in deconvolutionlab.module.dropdownbuttons
 
ChooseImageDropDownButton(String, AbstractImageSelectionModule, String) - Constructor for class deconvolutionlab.module.dropdownbuttons.ChooseImageDropDownButton
 
circular() - Method in class signal.RealSignal
 
circularShift() - Method in class signal.ComplexSignal
 
circularShift(RealSignal) - Static method in class signal.Operations
 
clear() - Method in class bilib.component.HTMLPane
 
clear() - Method in interface deconvolutionlab.monitor.AbstractMonitor
 
clear() - Method in class deconvolutionlab.monitor.ConsoleMonitor
 
clear() - Method in class deconvolutionlab.monitor.RunningMonitor
 
clear() - Method in class deconvolutionlab.monitor.StatusMonitor
 
clear() - Method in class deconvolutionlab.monitor.TableMonitor
 
clear() - Static method in class DL2
 
clear() - Method in class imagej.IJMonitor
 
clear() - Static method in class signal.SignalCollector
 
clip() - Method in class deconvolutionlab.output.Output
 
clip(float, float) - Method in class signal.RealSignal
 
clipped(RealSignal, float, float) - Method in class signal.Constraint
 
ClippedRange - Class in signal.range
 
ClippedRange(Monitors, RealSignal) - Constructor for class signal.range.ClippedRange
 
ClippedRange(Monitors, float, float) - Constructor for class signal.range.ClippedRange
 
close() - Method in class deconvolution.Deconvolution
 
close() - Static method in class deconvolutionlab.Lab
 
close() - Method in class deconvolutionlab.LabPanel
 
close() - Method in class deconvolutionlab.module.AboutModule
 
close() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
close() - Method in class deconvolutionlab.module.AbstractModule
 
close() - Method in class deconvolutionlab.module.AlgorithmModule
 
close() - Method in class deconvolutionlab.module.BatchModule
 
close() - Method in class deconvolutionlab.module.CommandModule
 
close() - Method in class deconvolutionlab.module.ComputationModule
 
close() - Method in class deconvolutionlab.module.ConfigModule
 
close() - Method in class deconvolutionlab.module.ControllerModule
 
close() - Method in class deconvolutionlab.module.DirectoryModule
 
close() - Method in class deconvolutionlab.module.ImageModule
 
close() - Method in class deconvolutionlab.module.LanguageModule
 
close() - Method in class deconvolutionlab.module.LicenceModule
 
close() - Method in class deconvolutionlab.module.OutputModule
 
close() - Method in class deconvolutionlab.module.PreprocessingModule
 
close() - Method in class deconvolutionlab.module.PSFModule
 
close() - Method in class deconvolutionlab.module.ReferenceModule
 
close() - Method in class deconvolutionlab.module.ResourcesModule
 
close() - Static method in class deconvolutionlab.system.SystemInfo
 
collapse() - Method in class deconvolutionlab.module.AbstractModule
 
collapse - Variable in class deconvolutionlab.system.AbstractMeter
 
collapse() - Method in class deconvolutionlab.system.AbstractMeter
 
colorBackground - Variable in class deconvolutionlab.system.AbstractMeter
 
colorHot - Variable in class deconvolutionlab.system.AbstractMeter
 
colorText - Variable in class deconvolutionlab.system.AbstractMeter
 
Command - Class in deconvolution
 
Command() - Constructor for class deconvolution.Command
 
CommandModule - Class in deconvolutionlab.module
 
CommandModule() - Constructor for class deconvolutionlab.module.CommandModule
 
CommandSegment - Class in deconvolution
 
CommandSegment(String, int) - Constructor for class deconvolution.CommandSegment
 
CommandToken - Class in deconvolution
This class is the basic component of the command.
CommandToken(String, String, int, int) - Constructor for class deconvolution.CommandToken
 
compareTo(CommandSegment) - Method in class deconvolution.CommandSegment
 
ComplexComponent - Enum in signal
 
ComplexSignal - Class in signal
 
ComplexSignal(String, int, int, int) - Constructor for class signal.ComplexSignal
 
ComplexSignalFactory - Class in signal.factory.complex
 
ComplexSignalFactory() - Constructor for class signal.factory.complex.ComplexSignalFactory
 
componentHidden(ComponentEvent) - Method in class deconvolutionlab.LabDialog
 
componentHidden(ComponentEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
componentMoved(ComponentEvent) - Method in class deconvolutionlab.LabDialog
 
componentMoved(ComponentEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
componentResized(ComponentEvent) - Method in class deconvolutionlab.LabDialog
 
componentResized(ComponentEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
componentShown(ComponentEvent) - Method in class deconvolutionlab.LabDialog
 
componentShown(ComponentEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
ComputationModule - Class in deconvolutionlab.module
 
ComputationModule() - Constructor for class deconvolutionlab.module.ComputationModule
 
compute(RealSignal, String, String, double, double, double) - Method in class deconvolution.Stats
 
computeHtH(double, ComplexSignal) - Static method in class signal.Operations
 
Config - Class in deconvolutionlab
 
Config() - Constructor for class deconvolutionlab.Config
 
ConfigModule - Class in deconvolutionlab.module
 
ConfigModule() - Constructor for class deconvolutionlab.module.ConfigModule
 
conjugate() - Method in class signal.ComplexSignal
 
conjugate(ComplexSignal) - Static method in class signal.Operations
 
ConsoleMonitor - Class in deconvolutionlab.monitor
 
ConsoleMonitor() - Constructor for class deconvolutionlab.monitor.ConsoleMonitor
 
Constant - Class in signal.factory
 
Constant() - Constructor for class signal.factory.Constant
 
Constants - Class in deconvolutionlab
 
Constants() - Constructor for class deconvolutionlab.Constants
 
Constraint - Enum in deconvolution.algorithm
 
Constraint - Class in signal
 
Constraint(Monitors) - Constructor for class signal.Constraint
 
Constraint.Mode - Enum in signal
 
ContainerImage() - Constructor for class deconvolutionlab.Imager.ContainerImage
 
controller - Variable in class deconvolution.algorithm.Algorithm
 
Controller - Class in deconvolution.algorithm
This is an important class to manage all the common task of the algorithm.
Controller() - Constructor for class deconvolution.algorithm.Controller
Constructor.
ControllerModule - Class in deconvolutionlab.module
 
ControllerModule() - Constructor for class deconvolutionlab.module.ControllerModule
 
CONV(Object, Object) - Static method in class DL2
 
CONV(Object, Object, String) - Static method in class DL2
 
CONV(Object, Object, Object, String) - Static method in class DL2
 
Converter - Class in matlab
 
Converter() - Constructor for class matlab.Converter
 
Convolution - Class in deconvolution.algorithm
 
Convolution() - Constructor for class deconvolution.algorithm.Convolution
 
ConvolutionPanel - Class in deconvolution.algorithm
 
ConvolutionPanel() - Constructor for class deconvolution.algorithm.ConvolutionPanel
 
copy(RealSignal) - Method in class signal.RealSignal
 
copyright - Static variable in class deconvolutionlab.Constants
 
create(String) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String, AbstractDropDownButton) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String, AbstractDropDownButton, AbstractDropDownButton) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String, String, AbstractDropDownButton) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String, String) - Method in class deconvolutionlab.module.AbstractModule
 
create(String, String, String, AbstractDropDownButton, AbstractDropDownButton) - Method in class deconvolutionlab.module.AbstractModule
 
create(AbstractMonitor) - Static method in class deconvolutionlab.monitor.Monitors
 
create(ImagePlus) - Static method in class imagej.IJImager
 
create(Sequence) - Static method in class plugins.sage.deconvolutionlab.IcyImager
 
createAlgorithm(String) - Static method in class deconvolution.algorithm.AlgorithmList
This static method return the algorithm specify by one of its shortname,
createContainer(String) - Method in class deconvolutionlab.Imager
 
createContainer(Monitors, String) - Static method in class deconvolutionlab.Lab
 
createContainer(String) - Method in class imagej.IJImager
 
createContainer(String) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
createDefaultMonitor() - Static method in class deconvolutionlab.monitor.Monitors
 
createFigure(int, int, int) - Method in class signal.RealSignal
 
createFromCommand(String) - Static method in class signal.factory.SignalFactory
 
createHermitian(String, int, int, int, float[][][], float[][][]) - Static method in class signal.factory.complex.ComplexSignalFactory
 
createHermitian(String, int, int, int, float[][][]) - Static method in class signal.factory.complex.ComplexSignalFactory
 
createMatlabMatrix(RealSignal) - Static method in class matlab.Converter
 
createMIP() - Method in class signal.RealSignal
 
createOrthoview() - Method in class signal.RealSignal
 
createOrthoview(int, int, int) - Method in class signal.RealSignal
 
createOverlayPlanar(RealSignal) - Static method in class deconvolutionlab.output.Output
 
createOverlayXYZ(RealSignal) - Static method in class deconvolutionlab.output.Output
 
createPlanar() - Method in class signal.RealSignal
 
createRealSignal(Monitors, String, String, String) - Static method in class deconvolution.Deconvolution
 
createRealSignal(Object) - Static method in class matlab.Converter
Create a new RealSignal from a Matlab variable with a specified title.
createSynthetic(Monitors, String) - Static method in class deconvolutionlab.Lab
 
crop(Monitors, RealSignal) - Method in class signal.padding.Padding
 
Cross - Class in signal.factory
 
Cross(double, double, double) - Constructor for class signal.factory.Cross
 
Cube - Class in signal.factory
 
Cube(double, double) - Constructor for class signal.factory.Cube
 
CubeSphericalBeads - Class in signal.factory
 
CubeSphericalBeads(double, double, double, double) - Constructor for class signal.factory.CubeSphericalBeads
 
CustomizedColumn - Class in bilib.table
This class allows to customized the columns of the CustomizedTable tables.
CustomizedColumn(String, Class<?>, int, boolean) - Constructor for class bilib.table.CustomizedColumn
 
CustomizedColumn(String, Class<?>, int, String[], String) - Constructor for class bilib.table.CustomizedColumn
 
CustomizedColumn(String, Class<?>, int, String, String) - Constructor for class bilib.table.CustomizedColumn
 
CustomizedTable - Class in bilib.table
This class build a table by extending JTable.
CustomizedTable(ArrayList<CustomizedColumn>, boolean) - Constructor for class bilib.table.CustomizedTable
 
CustomizedTable(String[], boolean) - Constructor for class bilib.table.CustomizedTable
 
CustomizedTable.ButtonRenderer - Class in bilib.table
 
CustomizedTable.DoubleFormattedRenderer - Class in bilib.table
 

D

data - Variable in class signal.Signal
 
decodeAlgorithm(String) - Static method in class deconvolution.Command
 
decodeAlgorithm(CommandToken) - Static method in class deconvolution.Command
 
decodeApodization(CommandToken) - Static method in class deconvolution.Command
 
decodeBoolean(String) - Static method in class deconvolution.Command
 
decodeConstraint(CommandToken) - Static method in class deconvolution.Command
 
decodeController(String) - Static method in class deconvolution.Command
 
decodeMonitors(String) - Static method in class deconvolution.Command
 
decodeNormalization(CommandToken) - Static method in class deconvolution.Command
 
decodeOut(CommandToken) - Static method in class deconvolution.Command
 
decodePadding(CommandToken) - Static method in class deconvolution.Command
 
decodeResidu(CommandToken) - Static method in class deconvolution.Command
 
decodeStats(CommandToken) - Static method in class deconvolution.Command
 
decodeTimeLimit(CommandToken) - Static method in class deconvolution.Command
 
deconvolution - package deconvolution
 
deconvolution - Variable in class deconvolution.capsule.AbstractCapsule
 
Deconvolution - Class in deconvolution
This class is the main class to run deconvolution with or without user interface.
Deconvolution(String, String) - Constructor for class deconvolution.Deconvolution
 
Deconvolution(String, String, Deconvolution.Finish) - Constructor for class deconvolution.Deconvolution
 
deconvolution.algorithm - package deconvolution.algorithm
 
deconvolution.capsule - package deconvolution.capsule
 
Deconvolution.Finish - Enum in deconvolution
 
DeconvolutionDialog - Class in deconvolution
 
DeconvolutionDialog(DeconvolutionDialog.Module, Deconvolution) - Constructor for class deconvolution.DeconvolutionDialog
 
DeconvolutionDialog.Module - Enum in deconvolution
 
DeconvolutionDialog.State - Enum in deconvolution
 
deconvolutionlab - package deconvolutionlab
 
deconvolutionlab.dialog - package deconvolutionlab.dialog
 
deconvolutionlab.module - package deconvolutionlab.module
 
deconvolutionlab.module.dropdownbuttons - package deconvolutionlab.module.dropdownbuttons
 
deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents - package deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents
 
deconvolutionlab.monitor - package deconvolutionlab.monitor
 
deconvolutionlab.output - package deconvolutionlab.output
 
deconvolutionlab.system - package deconvolutionlab.system
 
DeconvolutionLab2 - Class in <Unnamed>
 
DeconvolutionLab2(String) - Constructor for class DeconvolutionLab2
 
Deconvolutionlab2 - Class in plugins.sage.deconvolutionlab
 
Deconvolutionlab2() - Constructor for class plugins.sage.deconvolutionlab.Deconvolutionlab2
 
DeconvolutionLab2_Help - Class in <Unnamed>
This class only opens the current browser on the webpage of the Deconvolutionlab2 documentation.
DeconvolutionLab2_Help() - Constructor for class DeconvolutionLab2_Help
 
DeconvolutionLab2_Lab - Class in <Unnamed>
 
DeconvolutionLab2_Lab() - Constructor for class DeconvolutionLab2_Lab
 
DeconvolutionLab2_Launch - Class in <Unnamed>
 
DeconvolutionLab2_Launch() - Constructor for class DeconvolutionLab2_Launch
 
DeconvolutionLab2_Resources - Class in <Unnamed>
This class only opens the resources panel of the Deconvolutionlab2.
DeconvolutionLab2_Resources() - Constructor for class DeconvolutionLab2_Resources
 
DeconvolutionLab2_Run - Class in <Unnamed>
 
DeconvolutionLab2_Run() - Constructor for class DeconvolutionLab2_Run
 
DeconvolutionLabIcyFrame - Class in plugins.sage.deconvolutionlab
 
DeconvolutionLabIcyFrame() - Constructor for class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
deconvolve() - Method in class deconvolution.Deconvolution
 
deconvolve(RealSignal, RealSignal) - Method in class deconvolution.Deconvolution
 
deconvolve(RealSignal, RealSignal, RealSignal) - Method in class deconvolution.Deconvolution
 
Defocus - Class in signal.factory
 
Defocus(double, double, double) - Constructor for class signal.factory.Defocus
 
delta(double, ComplexSignal) - Static method in class signal.Operations
 
delta1(double, ComplexSignal) - Static method in class signal.Operations
 
demos - package demos
 
DemoSimulationAndAlgorithms_JavaCommand - Class in demos
This demo exists in 5 different interfaces: - using ImageJ Macro - using the command line interface (cshell) - in Java, using the DeconvolutionLab2 as a Java Library - in Java, using the command of DeconvolutionLab2 - in Matlab, calling methods of the class DL2
DemoSimulationAndAlgorithms_JavaCommand() - Constructor for class demos.DemoSimulationAndAlgorithms_JavaCommand
 
DemoSimulationAndAlgorithms_JavaLibrary - Class in demos
This demo exists in 5 different interfaces: - using ImageJ Macro - using the command line interface (cshell) - in Java, using the DeconvolutionLab2 as a Java Library - in Java, using the command of DeconvolutionLab2 - in Matlab, calling methods of the class DL2
DemoSimulationAndAlgorithms_JavaLibrary() - Constructor for class demos.DemoSimulationAndAlgorithms_JavaLibrary
 
detail(String) - Method in class deconvolutionlab.monitor.Monitors
 
Dialog() - Constructor for class imagej.IJImager.Dialog
 
die() - Method in class deconvolution.Deconvolution
 
dimAsString() - Method in class signal.Signal
 
dimParameters - Static variable in class deconvolutionlab.Constants
 
directionalDerivative(int, int, int, double, double, double) - Static method in class signal.factory.complex.ComplexSignalFactory
 
DirectionalDerivative - Class in signal.factory
 
DirectionalDerivative(double, double, double) - Constructor for class signal.factory.DirectionalDerivative
 
DirectionalMotionBlur - Class in signal.factory
 
DirectionalMotionBlur(double, double, double) - Constructor for class signal.factory.DirectionalMotionBlur
 
DirectoryModule - Class in deconvolutionlab.module
 
DirectoryModule() - Constructor for class deconvolutionlab.module.DirectoryModule
 
DirectoryModule.LocalDropTarget - Class in deconvolutionlab.module
 
disableMultithreading() - Method in class deconvolution.algorithm.Algorithm
 
disableSystem() - Method in class deconvolution.algorithm.Algorithm
 
dispose() - Method in class deconvolutionlab.LabDialog
 
DIV(Object, Object) - Static method in class DL2
 
DIV(Object, Object, String) - Static method in class DL2
 
DIV(Object, Object, Object, String) - Static method in class DL2
 
divide(ComplexSignal) - Method in class signal.ComplexSignal
 
divide(RealSignal, RealSignal, RealSignal) - Static method in class signal.Operations
 
divide(RealSignal, RealSignal) - Static method in class signal.Operations
 
divideNotStabilized(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
divideStabilized(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
DL2 - Class in <Unnamed>
This class allows Matlab interface for DeconvolutionLab2 A Matlab 3D variable in converted to a RealSignal and vice-versa.
DL2() - Constructor for class DL2
 
DoG - Class in signal.factory
 
DoG(double, double) - Constructor for class signal.factory.DoG
 
doInBackground() - Method in class signal.factory.SignalFactory.Worker
 
done - Variable in class signal.factory.SignalFactory.Worker
 
done() - Method in class signal.factory.SignalFactory.Worker
 
doubleArray(int) - Method in class bilib.tools.PsRandom
 
doubleArray(int, double) - Method in class bilib.tools.PsRandom
 
doubleArray(int, double, double) - Method in class bilib.tools.PsRandom
 
DoubleFormattedRenderer() - Constructor for class bilib.table.CustomizedTable.DoubleFormattedRenderer
 
DoubleHelix - Class in signal.factory
 
DoubleHelix(double, double, double) - Constructor for class signal.factory.DoubleHelix
 
drop(DropTargetDropEvent) - Method in class deconvolutionlab.module.DirectoryModule.LocalDropTarget
 
drop(DropTargetDropEvent) - Method in class deconvolutionlab.module.ImageModule.LocalDropTarget
 
drop(DropTargetDropEvent) - Method in class deconvolutionlab.module.PSFModule.LocalDropTarget
 
drop(DropTargetDropEvent) - Method in class deconvolutionlab.module.ReferenceModule.LocalDropTarget
 
duplicate() - Method in class signal.ComplexSignal
 
duplicate() - Method in class signal.RealSignal
 

E

edit() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
edit() - Method in class deconvolutionlab.module.ImageModule
 
edit() - Method in class deconvolutionlab.module.PSFModule
 
edit() - Method in class deconvolutionlab.module.ReferenceModule
 
enableMultithreading() - Method in class deconvolution.algorithm.Algorithm
 
enableSystem() - Method in class deconvolution.algorithm.Algorithm
 
ends(ComplexSignal) - Method in class deconvolution.algorithm.Controller
 
ends(RealSignal) - Method in class deconvolution.algorithm.Controller
 
epsilon - Static variable in class signal.Operations
 
error(String) - Method in class deconvolutionlab.monitor.Monitors
 
EvenPadding - Class in signal.padding
 
EvenPadding() - Constructor for class signal.padding.EvenPadding
 
executeFinal(Monitors, RealSignal, Controller) - Method in class deconvolutionlab.output.Output
 
executeIterative(Monitors, RealSignal, Controller, int) - Method in class deconvolutionlab.output.Output
 
exp() - Method in class signal.RealSignal
 
expand() - Method in class deconvolutionlab.module.AbstractModule
 
expand() - Method in class deconvolutionlab.module.LanguageModule
 
expand() - Method in class deconvolutionlab.module.ReferenceModule
 
expand() - Method in class deconvolutionlab.system.AbstractMeter
 
exponentialArray(double, double, int) - Method in class bilib.tools.PsRandom
 
extract(String, String) - Static method in class deconvolution.Command
 
extractOptions(String) - Static method in class deconvolution.Command
 
extractSnapshot(String) - Method in class deconvolutionlab.output.Output
 

F

Features - Class in deconvolution
 
Features() - Constructor for class deconvolution.Features
 
features - Variable in class deconvolutionlab.system.AbstractMeter
 
fft - Variable in class deconvolution.algorithm.Algorithm
 
FFTMeter - Class in deconvolutionlab.system
 
FFTMeter(int) - Constructor for class deconvolutionlab.system.FFTMeter
 
FileMeter - Class in deconvolutionlab.system
 
FileMeter(int) - Constructor for class deconvolutionlab.system.FileMeter
 
Files - Class in bilib.tools
 
Files() - Constructor for class bilib.tools.Files
 
fill(RealSignal) - Method in class signal.factory.Airy
 
fill(RealSignal) - Method in class signal.factory.Astigmatism
 
fill(RealSignal) - Method in class signal.factory.AxialDiffractionSimulation
 
fill(RealSignal) - Method in class signal.factory.BesselJ0
 
fill(RealSignal) - Method in class signal.factory.Constant
 
fill(RealSignal) - Method in class signal.factory.Cross
 
fill(RealSignal) - Method in class signal.factory.Cube
 
fill(RealSignal) - Method in class signal.factory.CubeSphericalBeads
 
fill(RealSignal) - Method in class signal.factory.Defocus
 
fill(RealSignal) - Method in class signal.factory.DirectionalDerivative
 
fill(RealSignal) - Method in class signal.factory.DirectionalMotionBlur
 
fill(RealSignal) - Method in class signal.factory.DoG
 
fill(RealSignal) - Method in class signal.factory.DoubleHelix
 
fill(RealSignal) - Method in class signal.factory.Gaussian
 
fill(RealSignal) - Method in class signal.factory.Impulse
 
fill(RealSignal) - Method in class signal.factory.Laplacian
 
fill(RealSignal) - Method in class signal.factory.Ramp
 
fill(RealSignal) - Method in class signal.factory.RandomLines
 
fill(RealSignal) - Method in class signal.factory.SignalFactory
 
fill(RealSignal) - Method in class signal.factory.Sinc
 
fill(RealSignal) - Method in class signal.factory.Sphere
 
fill(RealSignal) - Method in class signal.factory.Torus
 
fill(float) - Method in class signal.RealSignal
 
filter(ComplexSignal, ComplexSignal) - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
finalize() - Method in class deconvolution.capsule.AbstractCapsule
 
findSegment(String, String) - Static method in class deconvolution.Command
 
finish(RealSignal) - Method in class deconvolution.algorithm.Controller
 
FISTA - Class in deconvolution.algorithm
 
FISTA(int, double, double, String, int) - Constructor for class deconvolution.algorithm.FISTA
 
FISTAPanel - Class in deconvolution.algorithm
 
FISTAPanel() - Constructor for class deconvolution.algorithm.FISTAPanel
 
formatArray() - Method in class deconvolutionlab.monitor.Message
 
formatProgress() - Method in class deconvolutionlab.monitor.Message
 
formatTab() - Method in class deconvolutionlab.monitor.Message
 
fractXC - Variable in class signal.factory.SignalFactory
 
fractYC - Variable in class signal.factory.SignalFactory
 
fractZC - Variable in class signal.factory.SignalFactory
 
frechetArray(double, double, double, int) - Method in class bilib.tools.PsRandom
 
free(Signal) - Static method in class signal.SignalCollector
 

G

g - Variable in class wavelets.spline.SplineFilter
real highpass filter.
gaussian(RealSignal, double, double) - Method in class deconvolution.algorithm.Simulation
 
gaussian(int, int, int, double) - Static method in class signal.factory.complex.ComplexSignalFactory
 
Gaussian - Class in signal.factory
 
Gaussian(double, double, double) - Constructor for class signal.factory.Gaussian
 
generate(int, int, int) - Method in class signal.factory.SignalFactory
 
get() - Method in class bilib.component.SpinnerRangeDouble
Return the value with clipping the value in the range [min..max].
get() - Method in class bilib.component.SpinnerRangeFloat
Return the value without clipping the value in the range [min..max].
get() - Method in class bilib.component.SpinnerRangeInteger
Return the value without clipping the value in the range [min..max].
get(String) - Static method in class DL2
 
get(ImagePlus) - Static method in class matlab.Converter
Get an image.
get(String) - Static method in class resources.ImageLoader
 
get(String) - Static method in class signal.factory.SignalFactory
 
get3DArrayAsDouble() - Method in class signal.RealSignal
 
getActionButton() - Method in class deconvolutionlab.module.AbstractModule
 
getActiveImage() - Method in class deconvolutionlab.Imager
 
getActiveImage() - Static method in class deconvolutionlab.Lab
 
getActiveImage() - Method in class imagej.IJImager
 
getActiveImage() - Method in class plugins.sage.deconvolutionlab.IcyImager
 
getAlgorithm() - Method in class deconvolution.Deconvolution
 
getAll() - Static method in class signal.factory.SignalFactory
 
getAllName() - Static method in class signal.factory.SignalFactory
 
getApodization() - Method in class deconvolution.algorithm.Algorithm
 
getApodization() - Method in class deconvolution.algorithm.Controller
 
getApodizations() - Static method in class signal.apodization.Apodization
 
getApodizationsAsArray() - Static method in class signal.apodization.Apodization
 
getApodizationsName() - Static method in class signal.apodization.Apodization
 
getArrowColor() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Gets the color of the arrow.
getArrowSize() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
gets the size of the arrow.
getAsDouble(String) - Static method in class deconvolutionlab.Config
 
getAsString(String) - Static method in class deconvolutionlab.Config
 
getAsString() - Method in class deconvolutionlab.output.Output
 
getAvailableAlgorithms() - Static method in class deconvolution.algorithm.AlgorithmList
 
getAvailableSpace() - Static method in class deconvolutionlab.system.SystemUsage
 
getButton() - Method in class bilib.table.CustomizedColumn
 
getByName(String) - Static method in enum deconvolution.algorithm.Constraint
 
getByName(String) - Static method in enum deconvolutionlab.monitor.Verbose
 
getByName(String) - Static method in class signal.apodization.Apodization
 
getByName(String) - Static method in class signal.Constraint
 
getByName(String) - Static method in class signal.padding.Padding
 
getByShortname(String) - Static method in class signal.apodization.Apodization
 
getByShortname(String) - Static method in class signal.padding.Padding
 
getBytesPeakSignals() - Static method in class signal.SignalCollector
 
getBytesSignals() - Static method in class signal.SignalCollector
 
getCell(int, int) - Method in class bilib.table.CustomizedTable
 
getChoices() - Method in class bilib.table.CustomizedColumn
 
getCollapsedPanel() - Method in class deconvolutionlab.module.AbstractModule
 
getColumnClass() - Method in class bilib.table.CustomizedColumn
 
getComboBox(int) - Method in class bilib.table.CustomizedTable
 
getCommand() - Method in class deconvolution.algorithm.AlgorithmPanel
 
getCommand() - Method in class deconvolution.algorithm.ConvolutionPanel
 
getCommand() - Method in class deconvolution.algorithm.FISTAPanel
 
getCommand() - Method in class deconvolution.algorithm.ICTMPanel
 
getCommand() - Method in class deconvolution.algorithm.IdentityPanel
 
getCommand() - Method in class deconvolution.algorithm.ISTAPanel
 
getCommand() - Method in class deconvolution.algorithm.LandweberPanel
 
getCommand() - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
getCommand() - Method in class deconvolution.algorithm.NaiveInverseFilterPanel
 
getCommand() - Method in class deconvolution.algorithm.NonStabilizedDivisionPanel
 
getCommand() - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
getCommand() - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
getCommand() - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
getCommand() - Method in class deconvolution.algorithm.SimulationPanel
 
getCommand() - Method in class deconvolution.algorithm.StarkParkerPanel
 
getCommand() - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
getCommand() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
getCommand() - Method in class deconvolution.algorithm.VanCittertPanel
 
getCommand() - Method in class deconvolution.capsule.RecapCapsule
 
getCommand() - Method in class deconvolution.Deconvolution
 
getCommand() - Method in class deconvolutionlab.dialog.PatternDialog
 
getCommand() - Method in class deconvolutionlab.dialog.SyntheticDialog
 
getCommand() - Method in class deconvolutionlab.module.AboutModule
 
getCommand() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
getCommand() - Method in class deconvolutionlab.module.AbstractModule
 
getCommand() - Method in class deconvolutionlab.module.AlgorithmModule
 
getCommand() - Method in class deconvolutionlab.module.BatchModule
 
getCommand() - Method in class deconvolutionlab.module.CommandModule
 
getCommand() - Method in class deconvolutionlab.module.ComputationModule
 
getCommand() - Method in class deconvolutionlab.module.ConfigModule
 
getCommand() - Method in class deconvolutionlab.module.ControllerModule
 
getCommand() - Method in class deconvolutionlab.module.DirectoryModule
 
getCommand() - Method in class deconvolutionlab.module.ImageModule
 
getCommand() - Method in class deconvolutionlab.module.LanguageModule
 
getCommand() - Method in class deconvolutionlab.module.LicenceModule
 
getCommand() - Method in class deconvolutionlab.module.OutputModule
 
getCommand() - Method in class deconvolutionlab.module.PreprocessingModule
 
getCommand() - Method in class deconvolutionlab.module.PSFModule
 
getCommand() - Method in class deconvolutionlab.module.ReferenceModule
 
getCommand() - Method in class deconvolutionlab.module.ResourcesModule
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.Algorithm
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.Convolution
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.FISTA
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.ICTM
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.Identity
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.ISTA
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.Landweber
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.LandweberPositivity
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.RichardsonLucy
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.Simulation
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.StarkParker
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.TikhonovMiller
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getComplexityNumberofFFT() - Method in class deconvolution.algorithm.VanCittert
 
getConstraint() - Method in class deconvolution.algorithm.Algorithm
 
getConstraint() - Method in class deconvolution.algorithm.Controller
 
getConstraintAsString() - Method in class deconvolution.algorithm.Controller
 
getContraintsAsArray() - Static method in enum deconvolution.algorithm.Constraint
 
getContraintsAsArray() - Static method in class signal.Constraint
 
getController() - Method in class deconvolution.algorithm.Algorithm
 
getController() - Method in class deconvolution.Deconvolution
 
getCores() - Static method in class deconvolutionlab.system.SystemUsage
 
getCountJob() - Method in class deconvolutionlab.module.BatchModule
 
getCountPeakSignals() - Static method in class signal.SignalCollector
 
getCountSignals() - Static method in class signal.SignalCollector
 
getDeconvolutionReports() - Method in class deconvolution.Deconvolution
 
getDefault() - Static method in class signal.apodization.Apodization
 
getDefault() - Static method in class signal.padding.Padding
 
getDefaultAlgorithm() - Static method in class deconvolution.algorithm.AlgorithmList
 
getDefaultParameters() - Method in class deconvolution.algorithm.Algorithm
 
getDefaultParameters() - Method in class deconvolution.algorithm.Convolution
 
getDefaultParameters() - Method in class deconvolution.algorithm.FISTA
 
getDefaultParameters() - Method in class deconvolution.algorithm.ICTM
 
getDefaultParameters() - Method in class deconvolution.algorithm.Identity
 
getDefaultParameters() - Method in class deconvolution.algorithm.ISTA
 
getDefaultParameters() - Method in class deconvolution.algorithm.Landweber
 
getDefaultParameters() - Method in class deconvolution.algorithm.LandweberPositivity
 
getDefaultParameters() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getDefaultParameters() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getDefaultParameters() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getDefaultParameters() - Method in class deconvolution.algorithm.RichardsonLucy
 
getDefaultParameters() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getDefaultParameters() - Method in class deconvolution.algorithm.Simulation
 
getDefaultParameters() - Method in class deconvolution.algorithm.StarkParker
 
getDefaultParameters() - Method in class deconvolution.algorithm.TikhonovMiller
 
getDefaultParameters() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getDefaultParameters() - Method in class deconvolution.algorithm.VanCittert
 
getDefaultWavelets() - Static method in class wavelets.Wavelets
 
getDesktopDirectory() - Static method in class bilib.tools.Files
 
getDialog(String) - Static method in class deconvolutionlab.Config
 
getDirName() - Method in class deconvolutionlab.dialog.PatternDialog
 
getDisabledArrowColor() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
gets the disabled arrow color
getDocumentation(String) - Static method in class deconvolution.algorithm.AlgorithmList
 
getDocumentation() - Method in class deconvolution.algorithm.AlgorithmPanel
 
getDocumentation() - Method in class deconvolution.algorithm.ConvolutionPanel
 
getDocumentation() - Method in class deconvolution.algorithm.FISTAPanel
 
getDocumentation() - Method in class deconvolution.algorithm.ICTMPanel
 
getDocumentation() - Method in class deconvolution.algorithm.IdentityPanel
 
getDocumentation() - Method in class deconvolution.algorithm.ISTAPanel
 
getDocumentation() - Method in class deconvolution.algorithm.LandweberPanel
 
getDocumentation() - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
getDocumentation() - Method in class deconvolution.algorithm.NaiveInverseFilterPanel
 
getDocumentation() - Method in class deconvolution.algorithm.NonStabilizedDivisionPanel
 
getDocumentation() - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
getDocumentation() - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
getDocumentation() - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
getDocumentation() - Method in class deconvolution.algorithm.SimulationPanel
 
getDocumentation() - Method in class deconvolution.algorithm.StarkParkerPanel
 
getDocumentation() - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
getDocumentation() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
getDocumentation() - Method in class deconvolution.algorithm.VanCittertPanel
 
getDocumentation() - Method in class wavelets.AbstractWavelets
 
getDocumentation() - Method in class wavelets.haar.HaarWavelets
 
getDocumentation() - Method in class wavelets.spline.Spline1Wavelets
 
getDocumentation() - Method in class wavelets.spline.Spline3Wavelets
 
getDocumentation() - Method in class wavelets.spline.Spline5Wavelets
 
getDocumentation(String) - Static method in class wavelets.Wavelets
 
getEnergy() - Method in class signal.ComplexSignal
 
getEnergy() - Method in class signal.RealSignal
 
getEpsilon() - Method in class deconvolution.algorithm.Algorithm
 
getEpsilon() - Method in class deconvolution.algorithm.Controller
 
getExpandedPanel() - Method in class deconvolutionlab.module.AbstractModule
 
getExtrema() - Method in class signal.RealSignal
 
getFactoryByName(String) - Static method in class signal.factory.SignalFactory
 
getFFT() - Method in class deconvolution.algorithm.Algorithm
 
getFFT() - Method in class deconvolution.algorithm.Controller
 
getFilename() - Static method in class deconvolutionlab.Config
 
getHeader() - Method in class bilib.table.CustomizedColumn
 
getHeap() - Static method in class deconvolutionlab.system.SystemUsage
 
getHeapUsed() - Static method in class deconvolutionlab.system.SystemUsage
 
getHomeDirectory() - Static method in class bilib.tools.Files
 
getID() - Method in class deconvolution.capsule.AbstractCapsule
 
getID() - Method in class deconvolution.capsule.AlgorithmCapsule
 
getID() - Method in class deconvolution.capsule.ImageCapsule
 
getID() - Method in class deconvolution.capsule.PSFCapsule
 
getID() - Method in class deconvolution.capsule.RecapCapsule
 
getID() - Method in class deconvolution.capsule.ReportCapsule
 
getID() - Method in class deconvolution.capsule.ResourcesCapsule
 
getID() - Method in class deconvolutionlab.monitor.Message
 
getImag3DArrayAsDouble() - Method in class signal.ComplexSignal
 
getImage() - Method in class deconvolution.Deconvolution
 
getImage() - Static method in class deconvolutionlab.Lab
Return the active image.
getImage(String) - Static method in class deconvolutionlab.Lab
Return an image from the platform with a specified name.
getImage(Monitors, String) - Static method in class deconvolutionlab.Lab
Return an image from the platform with a specified name.
getImage() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Gets the image to be drawn in the split part.
getImageByName(String) - Method in class deconvolutionlab.Imager
 
getImageByName(String) - Method in class imagej.IJImager
 
getImageByName(String) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
getImager() - Static method in class deconvolutionlab.Lab
 
getImages() - Static method in class signal.factory.SignalFactory
 
getImagingByName() - Static method in class deconvolutionlab.Imager
 
getImagings() - Static method in class deconvolutionlab.Imager
 
getImagSignal() - Method in class signal.ComplexSignal
 
getImagX(int, int) - Method in class signal.ComplexSignal
 
getImagXY(int) - Method in class signal.ComplexSignal
 
getImagXYZ() - Method in class signal.ComplexSignal
 
getImagY(int, int) - Method in class signal.ComplexSignal
 
getImagZ(int, int) - Method in class signal.ComplexSignal
 
getIncrement() - Method in class bilib.component.SpinnerRangeDouble
Returns the incremental step.
getIncrement() - Method in class bilib.component.SpinnerRangeFloat
Returns the incremental step.
getIncrement() - Method in class bilib.component.SpinnerRangeInteger
Returns the incremental step.
getInitialSeed() - Method in class bilib.tools.PsRandom
 
getInterleaveXY(int) - Method in class signal.ComplexSignal
 
getInterleaveXYAtReal(int) - Method in class signal.RealSignal
 
getInterleaveXYZ() - Method in class signal.ComplexSignal
 
getInterleaveXYZAtReal() - Method in class signal.RealSignal
 
getInterleaveYX(int) - Method in class signal.ComplexSignal
 
getInterleaveZ(int, int) - Method in class signal.ComplexSignal
 
getInterpolatedPixel(double, double, double) - Method in class signal.RealSignal
Get a interpolated pixel value at specific position without specific boundary conditions.
getIterations() - Method in class deconvolution.algorithm.Algorithm
 
getIterations() - Method in class deconvolution.algorithm.Controller
 
getIterationsMax() - Method in class deconvolution.algorithm.Algorithm
 
getJobName() - Method in class deconvolutionlab.module.LanguageModule
 
getKey() - Method in class deconvolutionlab.module.AbstractModule
 
getLevel() - Method in class deconvolutionlab.monitor.Message
 
getLoad() - Static method in class deconvolutionlab.system.SystemUsage
 
getMemory() - Method in class deconvolution.algorithm.Algorithm
 
getMemory() - Method in class deconvolution.algorithm.Controller
 
getMemory() - Static method in class deconvolutionlab.system.SystemUsage
 
getMemoryAsString() - Method in class deconvolution.algorithm.Controller
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.Algorithm
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.Convolution
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.FISTA
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.ICTM
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.Identity
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.ISTA
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.Landweber
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.LandweberPositivity
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.RichardsonLucy
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.Simulation
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.StarkParker
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.TikhonovMiller
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getMemoryFootprintRatio() - Method in class deconvolution.algorithm.VanCittert
 
getMemoryMB() - Static method in class deconvolutionlab.system.SystemUsage
 
getMemoryUsage() - Method in class deconvolutionlab.system.SystemUsage
 
getMessage() - Method in class deconvolutionlab.monitor.Message
 
getMeterName() - Method in class deconvolutionlab.system.AbstractMeter
 
getMeterName() - Method in class deconvolutionlab.system.FFTMeter
 
getMeterName() - Method in class deconvolutionlab.system.FileMeter
 
getMeterName() - Method in class deconvolutionlab.system.JavaMeter
 
getMeterName() - Method in class deconvolutionlab.system.MemoryMeter
 
getMeterName() - Method in class deconvolutionlab.system.ProcessorMeter
 
getMeterName() - Method in class deconvolutionlab.system.SignalMeter
 
getMethodBinary() - Method in class bilib.tools.PsRandom
 
getMethodDecimal() - Method in class bilib.tools.PsRandom
 
getMethodInteger() - Method in class bilib.tools.PsRandom
 
getMinimumPane(int, int) - Method in class bilib.table.CustomizedTable
 
getMinimumSize() - Method in class deconvolutionlab.module.GroupedModulePanel
 
getMode() - Method in class deconvolution.Stats
 
getModule() - Method in class signal.ComplexSignal
 
getModules() - Method in class deconvolutionlab.module.GroupedModulePanel
 
getModuleXY(int) - Method in class signal.ComplexSignal
 
getModuleXY_dB(int) - Method in class signal.ComplexSignal
 
getMonitors() - Method in class deconvolution.algorithm.Algorithm
 
getMonitors() - Method in class deconvolution.algorithm.Controller
 
getMonitors() - Method in class deconvolution.Deconvolution
 
getName() - Method in class deconvolution.algorithm.Algorithm
 
getName() - Method in class deconvolution.algorithm.AlgorithmPanel
 
getName() - Method in class deconvolution.algorithm.Convolution
 
getName() - Method in class deconvolution.algorithm.ConvolutionPanel
 
getName() - Method in class deconvolution.algorithm.FISTA
 
getName() - Method in class deconvolution.algorithm.FISTAPanel
 
getName() - Method in class deconvolution.algorithm.ICTM
 
getName() - Method in class deconvolution.algorithm.ICTMPanel
 
getName() - Method in class deconvolution.algorithm.Identity
 
getName() - Method in class deconvolution.algorithm.IdentityPanel
 
getName() - Method in class deconvolution.algorithm.ISTA
 
getName() - Method in class deconvolution.algorithm.ISTAPanel
 
getName() - Method in class deconvolution.algorithm.Landweber
 
getName() - Method in class deconvolution.algorithm.LandweberPanel
 
getName() - Method in class deconvolution.algorithm.LandweberPositivity
 
getName() - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
getName() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getName() - Method in class deconvolution.algorithm.NaiveInverseFilterPanel
 
getName() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getName() - Method in class deconvolution.algorithm.NonStabilizedDivisionPanel
 
getName() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getName() - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
getName() - Method in class deconvolution.algorithm.RichardsonLucy
 
getName() - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
getName() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getName() - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
getName() - Method in class deconvolution.algorithm.Simulation
 
getName() - Method in class deconvolution.algorithm.SimulationPanel
 
getName() - Method in class deconvolution.algorithm.StarkParker
 
getName() - Method in class deconvolution.algorithm.StarkParkerPanel
 
getName() - Method in class deconvolution.algorithm.TikhonovMiller
 
getName() - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
getName() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getName() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
getName() - Method in class deconvolution.algorithm.VanCittert
 
getName() - Method in class deconvolution.algorithm.VanCittertPanel
 
getName() - Method in class deconvolution.Deconvolution
 
getName() - Method in class deconvolutionlab.Imager
 
getName() - Method in class deconvolutionlab.module.AbstractModule
 
getName() - Method in interface deconvolutionlab.monitor.AbstractMonitor
 
getName() - Method in class deconvolutionlab.monitor.ConsoleMonitor
 
getName() - Method in class deconvolutionlab.monitor.RunningMonitor
 
getName() - Method in class deconvolutionlab.monitor.StatusMonitor
 
getName() - Method in class deconvolutionlab.monitor.TableMonitor
 
getName() - Method in class deconvolutionlab.output.Output
 
getName() - Method in class imagej.IJImager.Dialog
 
getName() - Method in class imagej.IJImager
 
getName() - Method in class imagej.IJMonitor
 
getName() - Method in class plugins.sage.deconvolutionlab.IcyImager
 
getName() - Method in class signal.apodization.AbstractApodization
 
getName() - Method in class signal.apodization.HammingApodization
 
getName() - Method in class signal.apodization.HannApodization
 
getName() - Method in class signal.apodization.RaisedCosineApodization
 
getName() - Method in class signal.apodization.TukeyApodization
 
getName() - Method in class signal.apodization.UniformApodization
 
getName() - Method in class signal.apodization.WelchApodization
 
getName() - Method in class signal.factory.Airy
 
getName() - Method in class signal.factory.Astigmatism
 
getName() - Method in class signal.factory.AxialDiffractionSimulation
 
getName() - Method in class signal.factory.BesselJ0
 
getName() - Method in class signal.factory.Constant
 
getName() - Method in class signal.factory.Cross
 
getName() - Method in class signal.factory.Cube
 
getName() - Method in class signal.factory.CubeSphericalBeads
 
getName() - Method in class signal.factory.Defocus
 
getName() - Method in class signal.factory.DirectionalDerivative
 
getName() - Method in class signal.factory.DirectionalMotionBlur
 
getName() - Method in class signal.factory.DoG
 
getName() - Method in class signal.factory.DoubleHelix
 
getName() - Method in class signal.factory.Gaussian
 
getName() - Method in class signal.factory.Impulse
 
getName() - Method in class signal.factory.Laplacian
 
getName() - Method in class signal.factory.Ramp
 
getName() - Method in class signal.factory.RandomLines
 
getName() - Method in class signal.factory.SignalFactory
 
getName() - Method in class signal.factory.Sinc
 
getName() - Method in class signal.factory.Sphere
 
getName() - Method in class signal.factory.Torus
 
getName() - Method in class signal.padding.AbstractPadding
 
getName() - Method in class signal.padding.EvenPadding
 
getName() - Method in class signal.padding.Multiple235Padding
 
getName() - Method in class signal.padding.Multiple23Padding
 
getName() - Method in class signal.padding.Multiple2Padding
 
getName() - Method in class signal.padding.Multiple8Padding
 
getName() - Method in class signal.padding.MultiplePadding
 
getName() - Method in class signal.padding.NoPadding
 
getName() - Method in class signal.padding.Power2Padding
 
getName() - Method in class wavelets.AbstractWavelets
 
getName() - Method in class wavelets.haar.HaarWavelets
 
getName() - Method in class wavelets.spline.Spline1Wavelets
 
getName() - Method in class wavelets.spline.Spline3Wavelets
 
getName() - Method in class wavelets.spline.Spline5Wavelets
 
getNonHeap() - Static method in class deconvolutionlab.system.SystemUsage
 
getNonHeapUsed() - Static method in class deconvolutionlab.system.SystemUsage
 
getNormalizationPSF() - Method in class deconvolution.algorithm.Algorithm
 
getNormalizationPSF() - Method in class deconvolution.algorithm.Controller
 
getOnSplit() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
getOriginalDimension() - Method in class signal.padding.AbstractPadding
 
getOut() - Method in class deconvolutionlab.dialog.OutputDialog
 
getOutput() - Method in class deconvolution.Deconvolution
 
getOuts() - Method in class deconvolution.algorithm.Algorithm
 
getOuts() - Method in class deconvolution.algorithm.Controller
 
getPaddedDimension() - Method in class signal.padding.AbstractPadding
 
getPadding() - Method in class deconvolution.algorithm.Algorithm
 
getPadding() - Method in class deconvolution.algorithm.Controller
 
getPaddings() - Static method in class signal.padding.Padding
 
getPaddingsAsArray() - Static method in class signal.padding.Padding
 
getPaddingsName() - Static method in class signal.padding.Padding
 
getPane() - Method in class bilib.component.HTMLPane
 
getPane(int, int) - Method in class bilib.table.CustomizedTable
 
getPane() - Method in class deconvolution.capsule.AbstractCapsule
 
getPane() - Method in class deconvolutionlab.module.CommandModule
 
getPanel(String) - Static method in class deconvolution.algorithm.AlgorithmList
This static method return the panel associated with the algorithm specify by one of its shortname,
getPanel() - Method in class deconvolution.Stats
 
getPanel() - Method in class deconvolutionlab.monitor.RunningMonitor
 
getPanel() - Method in class deconvolutionlab.monitor.TableMonitor
 
getPanel(int, int) - Method in class deconvolutionlab.system.AbstractMeter
 
getPanel(int, int) - Static method in class signal.SignalCollector
 
getPanelParameters() - Method in class deconvolution.algorithm.AlgorithmPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.ConvolutionPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.FISTAPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.ICTMPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.IdentityPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.ISTAPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.LandweberPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.NaiveInverseFilterPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.NonStabilizedDivisionPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.SimulationPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.StarkParkerPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
getPanelParameters() - Method in class deconvolution.algorithm.VanCittertPanel
 
getParameter() - Method in class signal.apodization.AbstractApodization
 
getParameter() - Method in class signal.apodization.HammingApodization
 
getParameter() - Method in class signal.apodization.HannApodization
 
getParameter() - Method in class signal.apodization.RaisedCosineApodization
 
getParameter() - Method in class signal.apodization.TukeyApodization
 
getParameter() - Method in class signal.apodization.UniformApodization
 
getParameter() - Method in class signal.apodization.WelchApodization
 
getParameters() - Method in class deconvolution.algorithm.Algorithm
 
getParameters() - Method in class deconvolution.algorithm.Convolution
 
getParameters() - Method in class deconvolution.algorithm.FISTA
 
getParameters() - Method in class deconvolution.algorithm.ICTM
 
getParameters() - Method in class deconvolution.algorithm.Identity
 
getParameters() - Method in class deconvolution.algorithm.ISTA
 
getParameters() - Method in class deconvolution.algorithm.Landweber
 
getParameters() - Method in class deconvolution.algorithm.LandweberPositivity
 
getParameters() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getParameters() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getParameters() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getParameters() - Method in class deconvolution.algorithm.RichardsonLucy
 
getParameters() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getParameters() - Method in class deconvolution.algorithm.Simulation
 
getParameters() - Method in class deconvolution.algorithm.StarkParker
 
getParameters() - Method in class deconvolution.algorithm.TikhonovMiller
 
getParameters() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getParameters() - Method in class deconvolution.algorithm.VanCittert
 
getParameters() - Method in class signal.factory.Airy
 
getParameters() - Method in class signal.factory.Astigmatism
 
getParameters() - Method in class signal.factory.AxialDiffractionSimulation
 
getParameters() - Method in class signal.factory.BesselJ0
 
getParameters() - Method in class signal.factory.Constant
 
getParameters() - Method in class signal.factory.Cross
 
getParameters() - Method in class signal.factory.Cube
 
getParameters() - Method in class signal.factory.CubeSphericalBeads
 
getParameters() - Method in class signal.factory.Defocus
 
getParameters() - Method in class signal.factory.DirectionalDerivative
 
getParameters() - Method in class signal.factory.DirectionalMotionBlur
 
getParameters() - Method in class signal.factory.DoG
 
getParameters() - Method in class signal.factory.DoubleHelix
 
getParameters() - Method in class signal.factory.Gaussian
 
getParameters() - Method in class signal.factory.Impulse
 
getParameters() - Method in class signal.factory.Laplacian
 
getParameters() - Method in class signal.factory.Ramp
 
getParameters() - Method in class signal.factory.RandomLines
 
getParameters() - Method in class signal.factory.SignalFactory
 
getParameters() - Method in class signal.factory.Sinc
 
getParameters() - Method in class signal.factory.Sphere
 
getParameters() - Method in class signal.factory.Torus
 
getParametersAsString() - Method in class deconvolution.algorithm.Algorithm
 
getParametersName() - Method in class signal.factory.Airy
 
getParametersName() - Method in class signal.factory.Astigmatism
 
getParametersName() - Method in class signal.factory.AxialDiffractionSimulation
 
getParametersName() - Method in class signal.factory.BesselJ0
 
getParametersName() - Method in class signal.factory.Constant
 
getParametersName() - Method in class signal.factory.Cross
 
getParametersName() - Method in class signal.factory.Cube
 
getParametersName() - Method in class signal.factory.CubeSphericalBeads
 
getParametersName() - Method in class signal.factory.Defocus
 
getParametersName() - Method in class signal.factory.DirectionalDerivative
 
getParametersName() - Method in class signal.factory.DirectionalMotionBlur
 
getParametersName() - Method in class signal.factory.DoG
 
getParametersName() - Method in class signal.factory.DoubleHelix
 
getParametersName() - Method in class signal.factory.Gaussian
 
getParametersName() - Method in class signal.factory.Impulse
 
getParametersName() - Method in class signal.factory.Laplacian
 
getParametersName() - Method in class signal.factory.Ramp
 
getParametersName() - Method in class signal.factory.RandomLines
 
getParametersName() - Method in class signal.factory.SignalFactory
 
getParametersName() - Method in class signal.factory.Sinc
 
getParametersName() - Method in class signal.factory.Sphere
 
getParametersName() - Method in class signal.factory.Torus
 
getParametersToString() - Method in class deconvolution.algorithm.Algorithm
 
getPath() - Method in class deconvolution.algorithm.Algorithm
 
getPath() - Method in class deconvolution.algorithm.Controller
 
getPath() - Static method in class deconvolution.Command
 
getPlatform() - Static method in class deconvolutionlab.Lab
Returns the platform.
getPopupMenu() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Returns the JPopupMenu if set, null otherwise.
getPreferredSize() - Method in class deconvolutionlab.module.AbstractModule
 
getProgress() - Method in class deconvolutionlab.monitor.Message
 
getProgress() - Static method in class signal.SignalCollector
 
getPSF() - Method in class deconvolution.Deconvolution
 
getPSF() - Static method in class signal.factory.SignalFactory
 
getPSNR() - Method in class deconvolution.algorithm.Algorithm
 
getPSNR() - Method in class deconvolution.algorithm.Controller
 
getRangeMaximum() - Method in class bilib.component.SpinnerRangeDouble
 
getRangeMaximum() - Method in class bilib.component.SpinnerRangeFloat
 
getRangeMaximum() - Method in class bilib.component.SpinnerRangeInteger
 
getRangeMinimum() - Method in class bilib.component.SpinnerRangeDouble
 
getRangeMinimum() - Method in class bilib.component.SpinnerRangeFloat
 
getRangeMinimum() - Method in class bilib.component.SpinnerRangeInteger
 
getReal3DArrayAsDouble() - Method in class signal.ComplexSignal
 
getRealSignal() - Method in class signal.ComplexSignal
 
getRealX(int, int) - Method in class signal.ComplexSignal
 
getRealXY(int) - Method in class signal.ComplexSignal
 
getRealXYZ() - Method in class signal.ComplexSignal
 
getRealY(int, int) - Method in class signal.ComplexSignal
 
getRealY(int, int, int) - Method in class signal.ComplexSignal
 
getRealZ(int, int) - Method in class signal.ComplexSignal
 
getReference() - Method in class deconvolution.algorithm.Algorithm
 
getReference() - Method in class deconvolution.algorithm.Controller
 
getReference() - Method in class deconvolution.Deconvolution
 
getRegularizationFactor() - Method in class deconvolution.algorithm.Algorithm
 
getRegularizationFactor() - Method in class deconvolution.algorithm.Convolution
 
getRegularizationFactor() - Method in class deconvolution.algorithm.FISTA
 
getRegularizationFactor() - Method in class deconvolution.algorithm.ICTM
 
getRegularizationFactor() - Method in class deconvolution.algorithm.Identity
 
getRegularizationFactor() - Method in class deconvolution.algorithm.ISTA
 
getRegularizationFactor() - Method in class deconvolution.algorithm.Landweber
 
getRegularizationFactor() - Method in class deconvolution.algorithm.LandweberPositivity
 
getRegularizationFactor() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getRegularizationFactor() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getRegularizationFactor() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getRegularizationFactor() - Method in class deconvolution.algorithm.RichardsonLucy
 
getRegularizationFactor() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getRegularizationFactor() - Method in class deconvolution.algorithm.Simulation
 
getRegularizationFactor() - Method in class deconvolution.algorithm.StarkParker
 
getRegularizationFactor() - Method in class deconvolution.algorithm.TikhonovMiller
 
getRegularizationFactor() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getRegularizationFactor() - Method in class deconvolution.algorithm.VanCittert
 
getResidu() - Method in class deconvolution.algorithm.Algorithm
 
getResidu() - Method in class deconvolution.algorithm.Controller
 
getResiduMin() - Method in class deconvolution.algorithm.Algorithm
 
getResiduMin() - Method in class deconvolution.algorithm.Controller
 
getRow(int) - Method in class bilib.table.CustomizedTable
 
getRowCSV(int, String) - Method in class bilib.table.CustomizedTable
 
getScales() - Method in class wavelets.AbstractWavelets
 
getSeed() - Method in class bilib.tools.PsRandom
 
getSelectedAtColumn(int) - Method in class bilib.table.CustomizedTable
 
getSelectedImage() - Method in class deconvolutionlab.Imager
 
getSelectedImage() - Method in class imagej.IJImager
 
getSelectedImage() - Method in class plugins.sage.deconvolutionlab.IcyImager
 
getSelectedRow() - Method in class bilib.table.CustomizedTable
 
getSeparatorSpacing() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Returns the separatorSpacing.
getSerialVersionUID() - Static method in class bilib.tools.PsRandom
 
getShapeName() - Method in class deconvolutionlab.dialog.SyntheticDialog
 
getShortname() - Method in class signal.apodization.AbstractApodization
 
getShortname() - Method in class signal.apodization.HammingApodization
 
getShortname() - Method in class signal.apodization.HannApodization
 
getShortname() - Method in class signal.apodization.RaisedCosineApodization
 
getShortname() - Method in class signal.apodization.TukeyApodization
 
getShortname() - Method in class signal.apodization.UniformApodization
 
getShortname() - Method in class signal.apodization.WelchApodization
 
getShortname() - Method in class signal.padding.AbstractPadding
 
getShortname() - Method in class signal.padding.EvenPadding
 
getShortname() - Method in class signal.padding.Multiple235Padding
 
getShortname() - Method in class signal.padding.Multiple23Padding
 
getShortname() - Method in class signal.padding.Multiple2Padding
 
getShortname() - Method in class signal.padding.Multiple8Padding
 
getShortname() - Method in class signal.padding.MultiplePadding
 
getShortname() - Method in class signal.padding.NoPadding
 
getShortname() - Method in class signal.padding.Power2Padding
 
getShortnames() - Method in class deconvolution.algorithm.Algorithm
 
getShortnames() - Static method in class deconvolution.algorithm.AlgorithmList
 
getShortnames() - Method in class deconvolution.algorithm.AlgorithmPanel
 
getShortnames() - Method in class deconvolution.algorithm.Convolution
 
getShortnames() - Method in class deconvolution.algorithm.ConvolutionPanel
 
getShortnames() - Method in class deconvolution.algorithm.FISTA
 
getShortnames() - Method in class deconvolution.algorithm.FISTAPanel
 
getShortnames() - Method in class deconvolution.algorithm.ICTM
 
getShortnames() - Method in class deconvolution.algorithm.ICTMPanel
 
getShortnames() - Method in class deconvolution.algorithm.Identity
 
getShortnames() - Method in class deconvolution.algorithm.IdentityPanel
 
getShortnames() - Method in class deconvolution.algorithm.ISTA
 
getShortnames() - Method in class deconvolution.algorithm.ISTAPanel
 
getShortnames() - Method in class deconvolution.algorithm.Landweber
 
getShortnames() - Method in class deconvolution.algorithm.LandweberPanel
 
getShortnames() - Method in class deconvolution.algorithm.LandweberPositivity
 
getShortnames() - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
getShortnames() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getShortnames() - Method in class deconvolution.algorithm.NaiveInverseFilterPanel
 
getShortnames() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getShortnames() - Method in class deconvolution.algorithm.NonStabilizedDivisionPanel
 
getShortnames() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getShortnames() - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
getShortnames() - Method in class deconvolution.algorithm.RichardsonLucy
 
getShortnames() - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
getShortnames() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getShortnames() - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
getShortnames() - Method in class deconvolution.algorithm.Simulation
 
getShortnames() - Method in class deconvolution.algorithm.SimulationPanel
 
getShortnames() - Method in class deconvolution.algorithm.StarkParker
 
getShortnames() - Method in class deconvolution.algorithm.StarkParkerPanel
 
getShortnames() - Method in class deconvolution.algorithm.TikhonovMiller
 
getShortnames() - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
getShortnames() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getShortnames() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
getShortnames() - Method in class deconvolution.algorithm.VanCittert
 
getShortnames() - Method in class deconvolution.algorithm.VanCittertPanel
 
getSignal(RealSignal) - Method in class signal.RealSignal
 
getSlice(int) - Method in class signal.RealSignal
 
getSlider() - Method in class deconvolution.RegularizationPanel
 
getSNR() - Method in class deconvolution.algorithm.Algorithm
 
getSNR() - Method in class deconvolution.algorithm.Controller
 
getSplitWidth() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Splitwidth is the width of the split part of the button.
getStats() - Method in class deconvolution.algorithm.Algorithm
 
getStats() - Method in class deconvolution.algorithm.Controller
 
getStats() - Method in class signal.RealSignal
 
getStatsAsDouble() - Method in class signal.RealSignal
 
getStatsInput() - Method in class deconvolution.Stats
 
getStatsMode() - Method in class deconvolution.algorithm.Controller
 
getStepFactor() - Method in class deconvolution.algorithm.Algorithm
 
getStepFactor() - Method in class deconvolution.algorithm.Convolution
 
getStepFactor() - Method in class deconvolution.algorithm.FISTA
 
getStepFactor() - Method in class deconvolution.algorithm.ICTM
 
getStepFactor() - Method in class deconvolution.algorithm.Identity
 
getStepFactor() - Method in class deconvolution.algorithm.ISTA
 
getStepFactor() - Method in class deconvolution.algorithm.Landweber
 
getStepFactor() - Method in class deconvolution.algorithm.LandweberPositivity
 
getStepFactor() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
getStepFactor() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
getStepFactor() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
getStepFactor() - Method in class deconvolution.algorithm.RichardsonLucy
 
getStepFactor() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
getStepFactor() - Method in class deconvolution.algorithm.Simulation
 
getStepFactor() - Method in class deconvolution.algorithm.StarkParker
 
getStepFactor() - Method in class deconvolution.algorithm.TikhonovMiller
 
getStepFactor() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
getStepFactor() - Method in class deconvolution.algorithm.VanCittert
 
getStoppingCriteriaAsString(Algorithm) - Method in class deconvolution.algorithm.Controller
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class bilib.table.CustomizedTable.ButtonRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class bilib.table.CustomizedTable.DoubleFormattedRenderer
 
getText() - Method in class bilib.component.HTMLPane
 
getText() - Method in class deconvolution.RegularizationPanel
 
getTime() - Method in class deconvolution.algorithm.Algorithm
 
getTimeLimit() - Method in class deconvolution.algorithm.Algorithm
 
getTimeLimit() - Method in class deconvolution.algorithm.Controller
 
getTimeNano() - Method in class deconvolution.algorithm.Controller
 
getTimeSecond() - Method in class deconvolution.algorithm.Controller
 
getTitle() - Method in class deconvolutionlab.module.AbstractModule
 
getTooltip() - Method in class bilib.table.CustomizedColumn
 
getTotalSpace() - Static method in class deconvolutionlab.system.SystemUsage
 
getValue() - Method in class deconvolution.RegularizationPanel
 
getValue(int, int, int) - Method in class signal.ComplexSignal
 
getVerbose() - Method in class deconvolution.algorithm.Algorithm
 
getVerbose() - Method in class deconvolution.algorithm.Controller
 
getVerbose() - Method in class deconvolutionlab.monitor.Monitors
 
getView() - Method in class deconvolutionlab.output.Output
 
getVisibleSize(Dimension) - Method in class deconvolutionlab.module.GroupedModulePanel
 
getWavelets() - Static method in class wavelets.Wavelets
 
getWaveletsAsArray() - Static method in class wavelets.Wavelets
 
getWaveletsByName(String) - Static method in class wavelets.Wavelets
 
getWaveletsName() - Static method in class wavelets.Wavelets
 
getWidth() - Method in class bilib.table.CustomizedColumn
 
getWorkingDirectory() - Static method in class bilib.tools.Files
 
getX(int, int) - Method in class signal.RealSignal
 
getXY(int) - Method in class signal.RealSignal
 
getXYZ() - Method in class signal.RealSignal
 
getY(int, int) - Method in class signal.RealSignal
 
getZ(int, int) - Method in class signal.RealSignal
 
gradientX(RealSignal, RealSignal) - Method in class deconvolution.algorithm.RichardsonLucyTV
 
gradientY(RealSignal, RealSignal) - Method in class deconvolution.algorithm.RichardsonLucyTV
 
gradientZ(RealSignal, RealSignal) - Method in class deconvolution.algorithm.RichardsonLucyTV
 
GridPanel - Class in bilib.component
This class extends the JPanel to create grid panel given the possibility to place Java components in an organized manner in the dialog box.
GridPanel() - Constructor for class bilib.component.GridPanel
Constructor.
GridPanel(int) - Constructor for class bilib.component.GridPanel
Constructor.
GridPanel(boolean) - Constructor for class bilib.component.GridPanel
Constructor.
GridPanel(String) - Constructor for class bilib.component.GridPanel
Constructor.
GridPanel(boolean, int) - Constructor for class bilib.component.GridPanel
Constructor.
GridPanel(String, int) - Constructor for class bilib.component.GridPanel
Constructor.
GridToolbar - Class in bilib.component
This class extends the JToolbar to create grid panel given the possibility to place Java components in an organized manner in the dialog box.
GridToolbar() - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(String) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(int) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(boolean, int) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(boolean, int, boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(boolean, boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(String, boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(int, boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(String, int) - Constructor for class bilib.component.GridToolbar
Constructor.
GridToolbar(String, int, boolean) - Constructor for class bilib.component.GridToolbar
Constructor.
GroupedModulePanel - Class in deconvolutionlab.module
 
GroupedModulePanel(ArrayList<AbstractModule>, LabPanel) - Constructor for class deconvolutionlab.module.GroupedModulePanel
 

H

h - Variable in class deconvolution.algorithm.Algorithm
h is the PSF signal for the deconvolution.
h - Variable in class wavelets.spline.SplineFilter
real lowpass filter.
HaarWavelets - Class in wavelets.haar
 
HaarWavelets(int) - Constructor for class wavelets.haar.HaarWavelets
 
HammingApodization - Class in signal.apodization
 
HammingApodization() - Constructor for class signal.apodization.HammingApodization
 
HannApodization - Class in signal.apodization
 
HannApodization() - Constructor for class signal.apodization.HannApodization
 
heightLaunchGUI - Static variable in class deconvolutionlab.Constants
 
help - Static variable in class deconvolutionlab.Constants
 
help() - Static method in class deconvolutionlab.Lab
Open a web page on the DeconvolutionLab2.
help() - Static method in class DeconvolutionLab2
 
help() - Static method in class DL2
 
HTMLPane - Class in bilib.component
This class extends the Java JEditorPane to make a easy to use panel to display HTML information.
HTMLPane() - Constructor for class bilib.component.HTMLPane
 
HTMLPane(String) - Constructor for class bilib.component.HTMLPane
 
HTMLPane(int, int) - Constructor for class bilib.component.HTMLPane
 
HTMLPane(String, int, int) - Constructor for class bilib.component.HTMLPane
 
HTMLPane(String, String, String, int, int) - Constructor for class bilib.component.HTMLPane
 

I

ICTM - Class in deconvolution.algorithm
 
ICTM(int, double, double) - Constructor for class deconvolution.algorithm.ICTM
 
ICTM(Object, Object, double, double, double) - Static method in class DL2
 
ICTM(Object, Object, double, double, double, String) - Static method in class DL2
 
ICTM(Object, Object, Object, double, double, double, String) - Static method in class DL2
 
ICTMPanel - Class in deconvolution.algorithm
 
ICTMPanel() - Constructor for class deconvolution.algorithm.ICTMPanel
 
icyFrameActivated(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameClosed(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameClosing(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameDeactivated(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameDeiconified(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameExternalized(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameIconified(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameInternalized(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
icyFrameOpened(IcyFrameEvent) - Method in class plugins.sage.deconvolutionlab.DeconvolutionLabIcyFrame
 
IcyImager - Class in plugins.sage.deconvolutionlab
 
IcyImager() - Constructor for class plugins.sage.deconvolutionlab.IcyImager
 
Identity - Class in deconvolution.algorithm
 
Identity() - Constructor for class deconvolution.algorithm.Identity
 
identity(int, int, int) - Static method in class signal.factory.complex.ComplexSignalFactory
 
IdentityPanel - Class in deconvolution.algorithm
 
IdentityPanel() - Constructor for class deconvolution.algorithm.IdentityPanel
 
IdentityRange - Class in signal.range
 
IdentityRange(Monitors) - Constructor for class signal.range.IdentityRange
 
IJImager - Class in imagej
 
IJImager() - Constructor for class imagej.IJImager
 
IJImager.Dialog - Class in imagej
 
IJMonitor - Class in imagej
 
IJMonitor() - Constructor for class imagej.IJMonitor
 
ImageCapsule - Class in deconvolution.capsule
This class is a information module for the image source.
ImageCapsule(Deconvolution) - Constructor for class deconvolution.capsule.ImageCapsule
 
imagej - package imagej
 
ImageLoader - Class in resources
 
ImageLoader() - Constructor for class resources.ImageLoader
 
ImageModule - Class in deconvolutionlab.module
 
ImageModule() - Constructor for class deconvolutionlab.module.ImageModule
 
ImageModule.LocalDropTarget - Class in deconvolutionlab.module
 
Imager - Class in deconvolutionlab
 
Imager() - Constructor for class deconvolutionlab.Imager
 
Imager.ContainerImage - Class in deconvolutionlab
 
Imager.Type - Enum in deconvolutionlab
 
Impulse - Class in signal.factory
 
Impulse() - Constructor for class signal.factory.Impulse
 
index - Variable in class deconvolution.CommandSegment
 
init(String) - Static method in class deconvolutionlab.Config
 
init(Platform) - Static method in class deconvolutionlab.Lab
Initializes the Lab with a give platform.
init(Platform, String) - Static method in class deconvolutionlab.Lab
Initializes the Lab with a give platform and a given configuration file
initialized - Variable in class deconvolutionlab.system.AbstractMeter
 
insert(Object[]) - Method in class bilib.table.CustomizedTable
Add a row at the top of the table.
integerArray(int, int) - Method in class bilib.tools.PsRandom
 
integerArray(int, int, int) - Method in class bilib.tools.PsRandom
 
intensity(double) - Method in class signal.factory.SignalFactory
 
is(int) - Method in class deconvolutionlab.output.Output
 
isAdjustable() - Method in class signal.apodization.AbstractApodization
 
isAdjustable() - Method in class signal.apodization.HammingApodization
 
isAdjustable() - Method in class signal.apodization.HannApodization
 
isAdjustable() - Method in class signal.apodization.RaisedCosineApodization
 
isAdjustable() - Method in class signal.apodization.TukeyApodization
 
isAdjustable() - Method in class signal.apodization.UniformApodization
 
isAdjustable() - Method in class signal.apodization.WelchApodization
 
isAlwaysDropDown() - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Show the dropdown menu, if attached, even if the button part is clicked.
isEditable() - Method in class bilib.table.CustomizedColumn
 
isExpanded() - Method in class deconvolutionlab.module.AbstractModule
 
isExpanded() - Method in class deconvolutionlab.system.AbstractMeter
 
isIterative() - Method in class deconvolution.algorithm.Algorithm
 
isIterative() - Method in class deconvolution.algorithm.Convolution
 
isIterative() - Method in class deconvolution.algorithm.FISTA
 
isIterative() - Method in class deconvolution.algorithm.ICTM
 
isIterative() - Method in class deconvolution.algorithm.Identity
 
isIterative() - Method in class deconvolution.algorithm.ISTA
 
isIterative() - Method in class deconvolution.algorithm.Landweber
 
isIterative() - Method in class deconvolution.algorithm.LandweberPositivity
 
isIterative() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
isIterative() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
isIterative() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
isIterative() - Method in class deconvolution.algorithm.RichardsonLucy
 
isIterative() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
isIterative() - Method in class deconvolution.algorithm.Simulation
 
isIterative() - Method in class deconvolution.algorithm.StarkParker
 
isIterative() - Method in class deconvolution.algorithm.TikhonovMiller
 
isIterative() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
isIterative() - Method in class deconvolution.algorithm.VanCittert
 
isMultithreading() - Method in class deconvolution.algorithm.Algorithm
 
isMultithreading() - Method in class deconvolution.algorithm.Controller
 
isNamed(String) - Method in class deconvolution.algorithm.AlgorithmPanel
 
isRegularized() - Method in class deconvolution.algorithm.Algorithm
 
isRegularized() - Method in class deconvolution.algorithm.Convolution
 
isRegularized() - Method in class deconvolution.algorithm.FISTA
 
isRegularized() - Method in class deconvolution.algorithm.ICTM
 
isRegularized() - Method in class deconvolution.algorithm.Identity
 
isRegularized() - Method in class deconvolution.algorithm.ISTA
 
isRegularized() - Method in class deconvolution.algorithm.Landweber
 
isRegularized() - Method in class deconvolution.algorithm.LandweberPositivity
 
isRegularized() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
isRegularized() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
isRegularized() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
isRegularized() - Method in class deconvolution.algorithm.RichardsonLucy
 
isRegularized() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
isRegularized() - Method in class deconvolution.algorithm.Simulation
 
isRegularized() - Method in class deconvolution.algorithm.StarkParker
 
isRegularized() - Method in class deconvolution.algorithm.TikhonovMiller
 
isRegularized() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
isRegularized() - Method in class deconvolution.algorithm.VanCittert
 
isSelectable() - Method in class deconvolutionlab.Imager
 
isSelectable() - Method in class imagej.IJImager
 
isSelectable() - Method in class plugins.sage.deconvolutionlab.IcyImager
 
isShown() - Method in class deconvolution.Stats
 
isStepControllable() - Method in class deconvolution.algorithm.Algorithm
 
isStepControllable() - Method in class deconvolution.algorithm.Convolution
 
isStepControllable() - Method in class deconvolution.algorithm.FISTA
 
isStepControllable() - Method in class deconvolution.algorithm.ICTM
 
isStepControllable() - Method in class deconvolution.algorithm.Identity
 
isStepControllable() - Method in class deconvolution.algorithm.ISTA
 
isStepControllable() - Method in class deconvolution.algorithm.Landweber
 
isStepControllable() - Method in class deconvolution.algorithm.LandweberPositivity
 
isStepControllable() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
isStepControllable() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
isStepControllable() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
isStepControllable() - Method in class deconvolution.algorithm.RichardsonLucy
 
isStepControllable() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
isStepControllable() - Method in class deconvolution.algorithm.Simulation
 
isStepControllable() - Method in class deconvolution.algorithm.StarkParker
 
isStepControllable() - Method in class deconvolution.algorithm.TikhonovMiller
 
isStepControllable() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
isStepControllable() - Method in class deconvolution.algorithm.VanCittert
 
isSystem() - Method in class deconvolution.algorithm.Algorithm
 
isSystem() - Method in class deconvolution.algorithm.Controller
 
ISTA - Class in deconvolution.algorithm
 
ISTA(int, double, double, String, int) - Constructor for class deconvolution.algorithm.ISTA
 
ISTAPanel - Class in deconvolution.algorithm
 
ISTAPanel() - Constructor for class deconvolution.algorithm.ISTAPanel
 
isWaveletsBased() - Method in class deconvolution.algorithm.Algorithm
 
isWaveletsBased() - Method in class deconvolution.algorithm.Convolution
 
isWaveletsBased() - Method in class deconvolution.algorithm.FISTA
 
isWaveletsBased() - Method in class deconvolution.algorithm.ICTM
 
isWaveletsBased() - Method in class deconvolution.algorithm.Identity
 
isWaveletsBased() - Method in class deconvolution.algorithm.ISTA
 
isWaveletsBased() - Method in class deconvolution.algorithm.Landweber
 
isWaveletsBased() - Method in class deconvolution.algorithm.LandweberPositivity
 
isWaveletsBased() - Method in class deconvolution.algorithm.NaiveInverseFilter
 
isWaveletsBased() - Method in class deconvolution.algorithm.NonStabilizedDivision
 
isWaveletsBased() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
isWaveletsBased() - Method in class deconvolution.algorithm.RichardsonLucy
 
isWaveletsBased() - Method in class deconvolution.algorithm.RichardsonLucyTV
 
isWaveletsBased() - Method in class deconvolution.algorithm.Simulation
 
isWaveletsBased() - Method in class deconvolution.algorithm.StarkParker
 
isWaveletsBased() - Method in class deconvolution.algorithm.TikhonovMiller
 
isWaveletsBased() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
isWaveletsBased() - Method in class deconvolution.algorithm.VanCittert
 
iterMax - Variable in class deconvolution.algorithm.Algorithm
 

J

J0(double) - Static method in class bilib.tools.Bessel
 
J1(double) - Static method in class bilib.tools.Bessel
 
JavaMeter - Class in deconvolutionlab.system
 
JavaMeter(int) - Constructor for class deconvolutionlab.system.JavaMeter
 
JSplitButton - Class in deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents
An implementation of a "split" button.The left side acts like a normal button, right side has a jPopupMenu attached.
JSplitButton(String, boolean) - Constructor for class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Creates a button with initial text and an icon.

K

keyPressed(KeyEvent) - Method in class deconvolution.algorithm.FISTAPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.ICTMPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.ISTAPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.SimulationPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
keyPressed(KeyEvent) - Method in class deconvolution.capsule.RecapCapsule
 
keyPressed(KeyEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
keyPressed(KeyEvent) - Method in class deconvolutionlab.module.ControllerModule
 
keyPressed(KeyEvent) - Method in class deconvolutionlab.module.DirectoryModule
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.FISTAPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.ICTMPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.ISTAPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.SimulationPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
keyReleased(KeyEvent) - Method in class deconvolution.capsule.RecapCapsule
 
keyReleased(KeyEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
keyReleased(KeyEvent) - Method in class deconvolutionlab.module.ControllerModule
 
keyReleased(KeyEvent) - Method in class deconvolutionlab.module.DirectoryModule
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.FISTAPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.ICTMPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.ISTAPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.SimulationPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
keyTyped(KeyEvent) - Method in class deconvolution.capsule.RecapCapsule
 
keyTyped(KeyEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
keyTyped(KeyEvent) - Method in class deconvolutionlab.module.ControllerModule
 
keyTyped(KeyEvent) - Method in class deconvolutionlab.module.DirectoryModule
 
keyword - Variable in class deconvolution.CommandSegment
 
keyword - Variable in class deconvolution.CommandToken
 
keywords - Static variable in class deconvolution.Command
 

L

Lab - Class in deconvolutionlab
This class contains a collection of useful static methods to manage all the peripherical aspects of the deconvolution, such as load, display, or save an image.
Lab() - Constructor for class deconvolutionlab.Lab
 
lab() - Static method in class DL2
 
LabDialog - Class in deconvolutionlab
 
LabDialog() - Constructor for class deconvolutionlab.LabDialog
 
LabPanel - Class in deconvolutionlab
This class build the main panel for DeconvolutionLab2.
LabPanel(JButton) - Constructor for class deconvolutionlab.LabPanel
 
Landweber - Class in deconvolution.algorithm
 
Landweber(int, double) - Constructor for class deconvolution.algorithm.Landweber
 
LandweberPanel - Class in deconvolution.algorithm
 
LandweberPanel() - Constructor for class deconvolution.algorithm.LandweberPanel
 
LandweberPositivity - Class in deconvolution.algorithm
 
LandweberPositivity(int, double) - Constructor for class deconvolution.algorithm.LandweberPositivity
 
LandweberPositivityPanel - Class in deconvolution.algorithm
 
LandweberPositivityPanel() - Constructor for class deconvolution.algorithm.LandweberPositivityPanel
 
LanguageModule - Class in deconvolutionlab.module
 
LanguageModule() - Constructor for class deconvolutionlab.module.LanguageModule
 
laplacian(int, int, int) - Static method in class signal.factory.complex.ComplexSignalFactory
 
Laplacian - Class in signal.factory
 
Laplacian() - Constructor for class signal.factory.Laplacian
 
launch() - Method in class deconvolution.Deconvolution
This method runs the deconvolution with a graphical user interface.
launch(String) - Static method in class DL2
 
LicenceModule - Class in deconvolutionlab.module
 
LicenceModule() - Constructor for class deconvolutionlab.module.LicenceModule
 
list() - Static method in class deconvolutionlab.Config
 
load() - Static method in class deconvolutionlab.Config
 
LocalDropTarget() - Constructor for class deconvolutionlab.module.DirectoryModule.LocalDropTarget
 
LocalDropTarget() - Constructor for class deconvolutionlab.module.ImageModule.LocalDropTarget
 
LocalDropTarget() - Constructor for class deconvolutionlab.module.PSFModule.LocalDropTarget
 
LocalDropTarget() - Constructor for class deconvolutionlab.module.ReferenceModule.LocalDropTarget
 
location - Static variable in class deconvolution.DeconvolutionDialog
 
log(String) - Method in class deconvolutionlab.monitor.Monitors
 
log(RealSignal) - Static method in class signal.Operations
 
log() - Method in class signal.RealSignal
 
log10() - Method in class signal.RealSignal
 
logGamma(double) - Static method in class bilib.tools.PsRandom
 
logisticArray(double, double, int) - Method in class bilib.tools.PsRandom
 
lorentzianArray(double, double, int) - Method in class bilib.tools.PsRandom
 
LW(Object, Object, double, double) - Static method in class DL2
 
LW(Object, Object, double, double, String) - Static method in class DL2
 
LW(Object, Object, Object, double, double, String) - Static method in class DL2
 

M

main(String[]) - Static method in class DeconvolutionLab2
 
main(String[]) - Static method in class DeconvolutionLab2_Help
 
main(String[]) - Static method in class DeconvolutionLab2_Lab
 
main(String[]) - Static method in class DeconvolutionLab2_Launch
 
main(String[]) - Static method in class DeconvolutionLab2_Resources
 
main(String[]) - Static method in class DeconvolutionLab2_Run
 
main(String[]) - Static method in class demos.DemoSimulationAndAlgorithms_JavaCommand
 
main(String[]) - Static method in class demos.DemoSimulationAndAlgorithms_JavaLibrary
 
marker(String) - Static method in class signal.SignalCollector
 
matlab - package matlab
 
max(RealSignal) - Method in class signal.RealSignal
Takes the maximum (in-place processing)
maximalGumbelArray(double, double, int) - Method in class bilib.tools.PsRandom
 
measure(RealSignal, RealSignal) - Static method in class signal.Assessment
 
MemoryMeter - Class in deconvolutionlab.system
 
MemoryMeter(int) - Constructor for class deconvolutionlab.system.MemoryMeter
 
Message - Class in deconvolutionlab.monitor
 
Message(Verbose, String, double, double) - Constructor for class deconvolutionlab.monitor.Message
 
min(RealSignal) - Method in class signal.RealSignal
Takes the minimum (in-place processing)
minimalGumbelArray(double, double, int) - Method in class bilib.tools.PsRandom
 
minus(ComplexSignal) - Method in class signal.ComplexSignal
 
minus(RealSignal) - Method in class signal.RealSignal
Subtracts by a signal pixelwise (in-place processing)
minus(float) - Method in class signal.RealSignal
Subtracts a scalar term (in-place processing)
moduleName - Variable in class deconvolutionlab.module.dropdownbuttons.AbstractDropDownButton
 
Monitors - Class in deconvolutionlab.monitor
 
Monitors() - Constructor for class deconvolutionlab.monitor.Monitors
 
monitors - Variable in class signal.range.AbstractRange
 
monitors - Variable in class signal.range.ClippedRange
 
monitors - Variable in class signal.range.IdentityRange
 
monitors - Variable in class signal.range.NonNegativeRange
 
monitors - Variable in class signal.range.NormalizedRange
 
monitors - Variable in class signal.range.RescaledRange
 
mouseClicked(MouseEvent) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
mouseClicked(MouseEvent) - Method in class deconvolutionlab.module.BatchModule
 
mouseClicked(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mouseClicked(MouseEvent) - Method in class deconvolutionlab.module.OutputModule
 
mouseClicked(MouseEvent) - Method in class deconvolutionlab.system.SystemInfo
 
mouseDragged(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mouseEntered(MouseEvent) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
mouseEntered(MouseEvent) - Method in class deconvolutionlab.module.BatchModule
 
mouseEntered(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mouseEntered(MouseEvent) - Method in class deconvolutionlab.module.OutputModule
 
mouseEntered(MouseEvent) - Method in class deconvolutionlab.system.SystemInfo
 
mouseExited(MouseEvent) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
mouseExited(MouseEvent) - Method in class deconvolutionlab.module.BatchModule
 
mouseExited(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mouseExited(MouseEvent) - Method in class deconvolutionlab.module.OutputModule
 
mouseExited(MouseEvent) - Method in class deconvolutionlab.system.SystemInfo
 
mouseMoved(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mousePressed(MouseEvent) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
mousePressed(MouseEvent) - Method in class deconvolutionlab.module.BatchModule
 
mousePressed(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mousePressed(MouseEvent) - Method in class deconvolutionlab.module.OutputModule
 
mousePressed(MouseEvent) - Method in class deconvolutionlab.system.SystemInfo
 
mouseReleased(MouseEvent) - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
mouseReleased(MouseEvent) - Method in class deconvolutionlab.module.BatchModule
 
mouseReleased(MouseEvent) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
mouseReleased(MouseEvent) - Method in class deconvolutionlab.module.OutputModule
 
mouseReleased(MouseEvent) - Method in class deconvolutionlab.system.SystemInfo
 
Multiple235Padding - Class in signal.padding
 
Multiple235Padding() - Constructor for class signal.padding.Multiple235Padding
 
Multiple23Padding - Class in signal.padding
 
Multiple23Padding() - Constructor for class signal.padding.Multiple23Padding
 
Multiple2Padding - Class in signal.padding
 
Multiple2Padding() - Constructor for class signal.padding.Multiple2Padding
 
Multiple8Padding - Class in signal.padding
 
Multiple8Padding() - Constructor for class signal.padding.Multiple8Padding
 
MultiplePadding - Class in signal.padding
 
MultiplePadding(int) - Constructor for class signal.padding.MultiplePadding
 
multiply(ComplexSignal, ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
multiply(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
multiply(double, ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
multiply(double, ComplexSignal) - Static method in class signal.Operations
 
multiply(double) - Method in class signal.RealSignal
 
multiplyConjugate(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
multiplyConjugate(ComplexSignal, ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
multiplyConjugate(double, ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 

N

NaiveInverseFilter - Class in deconvolution.algorithm
 
NaiveInverseFilter() - Constructor for class deconvolution.algorithm.NaiveInverseFilter
 
NaiveInverseFilterPanel - Class in deconvolution.algorithm
 
NaiveInverseFilterPanel() - Constructor for class deconvolution.algorithm.NaiveInverseFilterPanel
 
name - Static variable in class deconvolutionlab.Constants
 
name - Variable in class signal.Signal
 
needSpatialComputation() - Method in class deconvolution.algorithm.Controller
 
nextBinomial(double, int) - Method in class bilib.tools.PsRandom
 
nextBit() - Method in class bilib.tools.PsRandom
 
nextBitM1() - Method in class bilib.tools.PsRandom
 
nextBitM2() - Method in class bilib.tools.PsRandom
 
nextDouble() - Method in class bilib.tools.PsRandom
 
nextDouble(double) - Method in class bilib.tools.PsRandom
 
nextDouble(double, double) - Method in class bilib.tools.PsRandom
 
nextExponential(double, double) - Method in class bilib.tools.PsRandom
 
nextFrechet(double, double, double) - Method in class bilib.tools.PsRandom
 
nextGaussian(double, double) - Method in class bilib.tools.PsRandom
 
nextGaussian() - Method in class bilib.tools.PsRandom
 
nextInteger(int, int) - Method in class bilib.tools.PsRandom
 
nextInteger(int) - Method in class bilib.tools.PsRandom
 
nextLogistic(double, double) - Method in class bilib.tools.PsRandom
 
nextLorentzian(double, double) - Method in class bilib.tools.PsRandom
 
nextMaximalGumbel(double, double) - Method in class bilib.tools.PsRandom
 
nextMinimalGumbel(double, double) - Method in class bilib.tools.PsRandom
 
nextNormal(double, double) - Method in class bilib.tools.PsRandom
 
nextNormal() - Method in class bilib.tools.PsRandom
 
nextPareto(double, double) - Method in class bilib.tools.PsRandom
 
nextPoissonian(double) - Method in class bilib.tools.PsRandom
 
nextRayleigh(double) - Method in class bilib.tools.PsRandom
 
nextSquare(double) - Method in class bilib.tools.PsRandom
 
nextWeibull(double, double, double) - Method in class bilib.tools.PsRandom
 
nice(double) - Static method in class bilib.tools.NumFormat
 
NIF(Object, Object) - Static method in class DL2
 
NIF(Object, Object, String) - Static method in class DL2
 
NIF(Object, Object, Object, String) - Static method in class DL2
 
NNLS(Object, Object, double, double) - Static method in class DL2
 
NNLS(Object, Object, double, double, String) - Static method in class DL2
 
NNLS(Object, Object, Object, double, double, String) - Static method in class DL2
 
nonnegative(RealSignal) - Method in class signal.Constraint
 
NonNegativeRange - Class in signal.range
 
NonNegativeRange(Monitors) - Constructor for class signal.range.NonNegativeRange
 
NonStabilizedDivision - Class in deconvolution.algorithm
 
NonStabilizedDivision() - Constructor for class deconvolution.algorithm.NonStabilizedDivision
 
NonStabilizedDivisionPanel - Class in deconvolution.algorithm
 
NonStabilizedDivisionPanel() - Constructor for class deconvolution.algorithm.NonStabilizedDivisionPanel
 
NoPadding - Class in signal.padding
 
NoPadding() - Constructor for class signal.padding.NoPadding
 
noRepeatIntegerArray(int, int, int) - Method in class bilib.tools.PsRandom
 
normalize(RealSignal, RealSignal, RealSignal) - Method in class deconvolution.algorithm.RichardsonLucyTV
 
normalize() - Method in class deconvolutionlab.output.Output
 
normalize(double) - Method in class signal.RealSignal
 
normalized(RealSignal, float, float) - Method in class signal.Constraint
 
NormalizedRange - Class in signal.range
 
NormalizedRange(Monitors, RealSignal) - Constructor for class signal.range.NormalizedRange
 
NormalizedRange(Monitors, float, float) - Constructor for class signal.range.NormalizedRange
 
NOTIFICATION_RATE - Static variable in class signal.SignalCollector
 
notify(String, double) - Method in class signal.ComplexSignal
 
notify(String, double) - Method in class signal.RealSignal
 
notify(String, double) - Method in interface signal.SignalListener
 
NumFormat - Class in bilib.tools
 
NumFormat() - Constructor for class bilib.tools.NumFormat
 
nx - Variable in class signal.factory.SignalFactory
 
nx - Variable in class signal.Signal
 
ny - Variable in class signal.factory.SignalFactory
 
ny - Variable in class signal.Signal
 
nz - Variable in class signal.factory.SignalFactory
 
nz - Variable in class signal.Signal
 

O

object - Variable in class deconvolutionlab.Imager.ContainerImage
 
open(String) - Static method in class bilib.tools.WebBrowser
 
open(String) - Method in class deconvolutionlab.Imager
 
open() - Method in class deconvolutionlab.module.AbstractModule
 
open(String, String, String) - Static method in class DL2
 
open(String) - Method in class imagej.IJImager
 
open(String) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
openDir(String) - Static method in class deconvolutionlab.Lab
Open a series of image from a directory.
openDir(Monitors, String) - Static method in class deconvolutionlab.Lab
Open a series of image from a directory.
openFile(String) - Static method in class deconvolutionlab.Lab
Open an image from the disk.
openFile(Monitors, String) - Static method in class deconvolutionlab.Lab
Open an image from the disk.
openImage() - Method in class deconvolution.Deconvolution
 
openPSF() - Method in class deconvolution.Deconvolution
 
openReference() - Method in class deconvolution.Deconvolution
 
Operations - Class in signal
 
Operations() - Constructor for class signal.Operations
 
optimizedMemoryFootprint - Variable in class deconvolution.algorithm.Algorithm
Optimized implementation in term of memory footprint
option - Variable in class deconvolution.CommandToken
 
organize() - Method in class deconvolutionlab.module.GroupedModulePanel
 
origin(int, int, int) - Method in class deconvolutionlab.output.Output
 
OutFigure - Class in deconvolutionlab.output
 
OutFigure(String) - Constructor for class deconvolutionlab.output.OutFigure
 
OutFigure(String, String) - Constructor for class deconvolutionlab.output.OutFigure
 
OutMIP - Class in deconvolutionlab.output
 
OutMIP(String) - Constructor for class deconvolutionlab.output.OutMIP
 
OutMIP(String, String) - Constructor for class deconvolutionlab.output.OutMIP
 
OutOrtho - Class in deconvolutionlab.output
 
OutOrtho(String) - Constructor for class deconvolutionlab.output.OutOrtho
 
OutOrtho(String, String) - Constructor for class deconvolutionlab.output.OutOrtho
 
OutPlanar - Class in deconvolutionlab.output
 
OutPlanar(String) - Constructor for class deconvolutionlab.output.OutPlanar
 
OutPlanar(String, String) - Constructor for class deconvolutionlab.output.OutPlanar
 
Output - Class in deconvolutionlab.output
 
Output(Output.View, int, String) - Constructor for class deconvolutionlab.output.Output
 
Output(Output.View, String) - Constructor for class deconvolutionlab.output.Output
 
Output.Action - Enum in deconvolutionlab.output
 
Output.Dynamic - Enum in deconvolutionlab.output
 
Output.View - Enum in deconvolutionlab.output
 
OutputDialog - Class in deconvolutionlab.dialog
 
OutputDialog(Output.View) - Constructor for class deconvolutionlab.dialog.OutputDialog
 
OutputModule - Class in deconvolutionlab.module
 
OutputModule() - Constructor for class deconvolutionlab.module.OutputModule
 
OutSeries - Class in deconvolutionlab.output
 
OutSeries(String) - Constructor for class deconvolutionlab.output.OutSeries
 
OutSeries(String, String) - Constructor for class deconvolutionlab.output.OutSeries
 
OutStack - Class in deconvolutionlab.output
 
OutStack(String) - Constructor for class deconvolutionlab.output.OutStack
 
OutStack(String, String) - Constructor for class deconvolutionlab.output.OutStack
 

P

pad(int, int, int) - Method in class signal.padding.AbstractPadding
 
pad(int, int, int) - Method in class signal.padding.Padding
 
pad(Monitors, RealSignal) - Method in class signal.padding.Padding
 
padding(int) - Method in class signal.padding.AbstractPadding
 
padding(int) - Method in class signal.padding.EvenPadding
 
padding(int) - Method in class signal.padding.Multiple235Padding
 
padding(int) - Method in class signal.padding.Multiple23Padding
 
padding(int) - Method in class signal.padding.Multiple2Padding
 
padding(int) - Method in class signal.padding.Multiple8Padding
 
padding(int) - Method in class signal.padding.MultiplePadding
 
padding(int) - Method in class signal.padding.NoPadding
 
Padding - Class in signal.padding
 
Padding() - Constructor for class signal.padding.Padding
 
Padding(int, int, int) - Constructor for class signal.padding.Padding
 
Padding(AbstractPadding, AbstractPadding, AbstractPadding, int, int, int) - Constructor for class signal.padding.Padding
 
Padding(AbstractPadding, int) - Constructor for class signal.padding.Padding
 
Padding(String, String, String, int, int, int) - Constructor for class signal.padding.Padding
 
padding(int) - Method in class signal.padding.Power2Padding
 
paintComponent(Graphics) - Method in class bilib.component.PanelImage
 
paintComponent(Graphics) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.FFTMeter
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.FileMeter
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.JavaMeter
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.MemoryMeter
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.ProcessorMeter
 
paintComponent(Graphics) - Method in class deconvolutionlab.system.SignalMeter
 
PanelImage - Class in bilib.component
 
PanelImage() - Constructor for class bilib.component.PanelImage
 
PanelImage(String) - Constructor for class bilib.component.PanelImage
 
PanelImage(int, int) - Constructor for class bilib.component.PanelImage
 
PanelImage(String, int, int) - Constructor for class bilib.component.PanelImage
 
parameters - Variable in class deconvolution.CommandToken
 
params() - Method in class signal.factory.SignalFactory
 
paretoArray(double, double, int) - Method in class bilib.tools.PsRandom
 
parkMiller() - Method in class bilib.tools.PsRandom
 
parse(String) - Static method in class deconvolution.Command
This methods first segments the command line, then create all the tokens of the command line
parseNumber(String, double) - Static method in class bilib.tools.NumFormat
 
parseNumbers(String) - Static method in class bilib.tools.NumFormat
 
parseNumbersAfter(String, String) - Static method in class bilib.tools.NumFormat
 
parseNumeric(String) - Static method in class deconvolution.Command
 
PatternDialog - Class in deconvolutionlab.dialog
 
PatternDialog(File) - Constructor for class deconvolutionlab.dialog.PatternDialog
 
place(int, int, String) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, String) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, int, String) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, JComponent) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, JComponent) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, int, JComponent) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, int, int, JComponent) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, int, int, int, int, JComponent) - Method in class bilib.component.GridPanel
Place a component in the northwest of the cell.
place(int, int, String) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, int, String) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, int, int, String) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, JComponent) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, int, JComponent) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, int, int, JComponent) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
place(int, int, int, int, int, JComponent) - Method in class bilib.component.GridToolbar
Place a component in the northwest of the cell.
platform() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
Platform - Enum in deconvolutionlab
 
plotProfile(RealSignal, String, int, int, int, int, int, int) - Static method in class deconvolutionlab.Lab
 
plugins.sage.deconvolutionlab - package plugins.sage.deconvolutionlab
 
plus(float, float) - Method in class signal.ComplexSignal
 
plus(ComplexSignal) - Method in class signal.ComplexSignal
 
plus(RealSignal) - Method in class signal.RealSignal
Adds a signal pixelwise (in-place processing)
plus(float) - Method in class signal.RealSignal
Adds a scalar term (in-place processing)
poisson(RealSignal, double) - Method in class deconvolution.algorithm.Simulation
 
poissonianArray(double, int) - Method in class bilib.tools.PsRandom
 
Power2Padding - Class in signal.padding
 
Power2Padding() - Constructor for class signal.padding.Power2Padding
 
prefix - Variable in class deconvolutionlab.system.AbstractMeter
 
PreprocessingModule - Class in deconvolutionlab.module
 
PreprocessingModule() - Constructor for class deconvolutionlab.module.PreprocessingModule
 
preview() - Method in class signal.RealSignal
 
print() - Static method in class deconvolutionlab.Config
 
printInit() - Static method in class deconvolutionlab.Config
 
process(RealSignal) - Method in class signal.range.AbstractRange
 
ProcessorMeter - Class in deconvolutionlab.system
 
ProcessorMeter(int) - Constructor for class deconvolutionlab.system.ProcessorMeter
 
progress(String, double) - Method in class deconvolutionlab.monitor.Monitors
 
PSFCapsule - Class in deconvolution.capsule
This class is a information module for the PSF source.
PSFCapsule(Deconvolution) - Constructor for class deconvolution.capsule.PSFCapsule
 
PSFModule - Class in deconvolutionlab.module
 
PSFModule() - Constructor for class deconvolutionlab.module.PSFModule
 
PSFModule.LocalDropTarget - Class in deconvolutionlab.module
 
psnr(RealSignal, RealSignal) - Static method in class signal.Assessment
 
PsRandom - Class in bilib.tools
 
PsRandom() - Constructor for class bilib.tools.PsRandom
 
PsRandom(long) - Constructor for class bilib.tools.PsRandom
 

R

RaisedCosineApodization - Class in signal.apodization
 
RaisedCosineApodization(double) - Constructor for class signal.apodization.RaisedCosineApodization
 
Ramp - Class in signal.factory
 
Ramp(double, double, double) - Constructor for class signal.factory.Ramp
 
RandomLines - Class in signal.factory
 
RandomLines(double) - Constructor for class signal.factory.RandomLines
 
rayleighArray(double, int) - Method in class bilib.tools.PsRandom
 
RealSignal - Class in signal
 
RealSignal(String, int, int, int) - Constructor for class signal.RealSignal
 
recap() - Method in class deconvolution.Deconvolution
This methods make a recap of the deconvolution.
RecapCapsule - Class in deconvolution.capsule
This class is a information module for a recapitulation of the command line.
RecapCapsule(Deconvolution) - Constructor for class deconvolution.capsule.RecapCapsule
 
reference - Static variable in class deconvolutionlab.Constants
 
ReferenceModule - Class in deconvolutionlab.module
 
ReferenceModule() - Constructor for class deconvolutionlab.module.ReferenceModule
 
ReferenceModule.LocalDropTarget - Class in deconvolutionlab.module
 
register(String, String, JComponent, Object) - Static method in class deconvolutionlab.Config
 
registerFrame(String, String, JDialog) - Static method in class deconvolutionlab.Config
 
registerTable(String, String, CustomizedTable) - Static method in class deconvolutionlab.Config
 
RegularizationPanel - Class in deconvolution
 
RegularizationPanel(double) - Constructor for class deconvolution.RegularizationPanel
 
RegularizedInverseFilter - Class in deconvolution.algorithm
 
RegularizedInverseFilter(double) - Constructor for class deconvolution.algorithm.RegularizedInverseFilter
 
RegularizedInverseFilterPanel - Class in deconvolution.algorithm
 
RegularizedInverseFilterPanel() - Constructor for class deconvolution.algorithm.RegularizedInverseFilterPanel
 
relativeResidu(RealSignal, RealSignal) - Static method in class signal.Assessment
 
removeRow(int) - Method in class bilib.table.CustomizedTable
Removes one specify row from the table.
removeRows() - Method in class bilib.table.CustomizedTable
Removes all rows of the table.
removeSplitButtonActionListener(SplitButtonActionListener) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Removes an SplitButtonActionListener from the button.
replicate() - Method in class signal.ComplexSignal
 
ReportCapsule - Class in deconvolution.capsule
This class is a information module for report the output.
ReportCapsule(Deconvolution) - Constructor for class deconvolution.capsule.ReportCapsule
 
rescale() - Method in class deconvolutionlab.output.Output
 
rescale(Monitors) - Method in class signal.RealSignal
 
rescale(double, double) - Method in class signal.RealSignal
 
rescaled(RealSignal, float, float) - Method in class signal.Constraint
 
RescaledRange - Class in signal.range
 
RescaledRange(Monitors, double, double) - Constructor for class signal.range.RescaledRange
 
reset() - Method in class deconvolutionlab.monitor.RunningMonitor
 
reset() - Method in class deconvolutionlab.system.MemoryMeter
 
resetSignals() - Static method in class signal.SignalCollector
 
resources - package resources
 
ResourcesCapsule - Class in deconvolution.capsule
This class is a information module about the resources of the machine (memory, processor, allocated signals).
ResourcesCapsule(Deconvolution) - Constructor for class deconvolution.capsule.ResourcesCapsule
 
ResourcesModule - Class in deconvolutionlab.module
 
ResourcesModule() - Constructor for class deconvolutionlab.module.ResourcesModule
 
restart() - Method in class deconvolutionlab.system.RuntimeInfoPanel
 
restart() - Method in class deconvolutionlab.system.SystemInfo
 
RichardsonLucy - Class in deconvolution.algorithm
 
RichardsonLucy(int) - Constructor for class deconvolution.algorithm.RichardsonLucy
 
RichardsonLucyPanel - Class in deconvolution.algorithm
 
RichardsonLucyPanel() - Constructor for class deconvolution.algorithm.RichardsonLucyPanel
 
RichardsonLucyTV - Class in deconvolution.algorithm
 
RichardsonLucyTV(int, double) - Constructor for class deconvolution.algorithm.RichardsonLucyTV
 
RichardsonLucyTVPanel - Class in deconvolution.algorithm
 
RichardsonLucyTVPanel() - Constructor for class deconvolution.algorithm.RichardsonLucyTVPanel
 
RIF(Object, Object, double, String) - Static method in class DL2
 
RIF(Object, Object, double) - Static method in class DL2
 
RIF(Object, Object, Object, double, String) - Static method in class DL2
 
rings(int, int, int, double) - Static method in class signal.factory.complex.ComplexSignalFactory
 
RL(Object, Object, double) - Static method in class DL2
 
RL(Object, Object, double, String) - Static method in class DL2
 
RL(Object, Object, Object, double, String) - Static method in class DL2
 
RLTV(Object, Object, double, double) - Static method in class DL2
 
RLTV(Object, Object, double, double, String) - Static method in class DL2
 
RLTV(Object, Object, Object, double, double, String) - Static method in class DL2
 
rmse(RealSignal, RealSignal) - Static method in class signal.Assessment
 
rotate(float[]) - Method in class signal.RealSignal
 
run(RealSignal, RealSignal, RealSignal) - Method in class deconvolution.algorithm.Algorithm
 
run(RealSignal, RealSignal) - Method in class deconvolution.algorithm.Algorithm
 
run() - Method in class deconvolution.capsule.AlgorithmCapsule
 
run() - Method in class deconvolution.capsule.ImageCapsule
 
run() - Method in class deconvolution.capsule.PSFCapsule
 
run() - Method in class deconvolution.Deconvolution
 
run() - Method in class deconvolution.DeconvolutionDialog
 
run(String) - Method in class DeconvolutionLab2_Help
 
run(String) - Method in class DeconvolutionLab2_Lab
 
run(String) - Method in class DeconvolutionLab2_Launch
 
run(String) - Method in class DeconvolutionLab2_Resources
 
run(String) - Method in class DeconvolutionLab2_Run
 
run(String) - Static method in class DL2
 
run(Object, Object, String) - Static method in class DL2
 
run() - Method in class plugins.sage.deconvolutionlab.Deconvolutionlab2
 
run() - Method in class plugins.sage.deconvolutionlab.Test
 
RunningMonitor - Class in deconvolutionlab.monitor
 
RunningMonitor(int, int) - Constructor for class deconvolutionlab.monitor.RunningMonitor
 
runOptimizedMemoryFootprint() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
runOptimizedMemoryFootprint() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
runTextBook() - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
runTextBook() - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
RuntimeInfoPanel - Class in deconvolutionlab.system
 
RuntimeInfoPanel(long) - Constructor for class deconvolutionlab.system.RuntimeInfoPanel
 

S

save(Monitors, String) - Method in class deconvolution.Stats
 
save(RealSignal, String, Imager.Type) - Method in class deconvolutionlab.Imager
 
save(Monitors, RealSignal, String, String) - Static method in class deconvolutionlab.Lab
 
save(Monitors, RealSignal, String, String, Imager.Type) - Static method in class deconvolutionlab.Lab
 
save(Monitors, RealSignal, String, Imager.Type) - Static method in class deconvolutionlab.Lab
 
save(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
save(RealSignal, String, String) - Static method in class deconvolutionlab.Lab
 
save(RealSignal, String, String, Imager.Type) - Static method in class deconvolutionlab.Lab
 
save(RealSignal, String) - Static method in class deconvolutionlab.Lab
 
save(RealSignal, String, Imager.Type) - Static method in class deconvolutionlab.Lab
 
save(RealSignal, String, Imager.Type) - Method in class imagej.IJImager
 
save(RealSignal, String, Imager.Type) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
saveCSV(String) - Method in class bilib.table.CustomizedTable
Saves the table in a CSV file
SaveFigure - Class in deconvolutionlab.output
 
SaveFigure(String, String) - Constructor for class deconvolutionlab.output.SaveFigure
 
SaveFigure(String) - Constructor for class deconvolutionlab.output.SaveFigure
 
SaveMIP - Class in deconvolutionlab.output
 
SaveMIP(String, String) - Constructor for class deconvolutionlab.output.SaveMIP
 
SaveMIP(String) - Constructor for class deconvolutionlab.output.SaveMIP
 
SaveOrtho - Class in deconvolutionlab.output
 
SaveOrtho(String, String) - Constructor for class deconvolutionlab.output.SaveOrtho
 
SaveOrtho(String) - Constructor for class deconvolutionlab.output.SaveOrtho
 
SavePlanar - Class in deconvolutionlab.output
 
SavePlanar(String, String) - Constructor for class deconvolutionlab.output.SavePlanar
 
SavePlanar(String) - Constructor for class deconvolutionlab.output.SavePlanar
 
SaveSeries - Class in deconvolutionlab.output
 
SaveSeries(String, String) - Constructor for class deconvolutionlab.output.SaveSeries
 
SaveSeries(String) - Constructor for class deconvolutionlab.output.SaveSeries
 
SaveStack - Class in deconvolutionlab.output
 
SaveStack(String, String) - Constructor for class deconvolutionlab.output.SaveStack
 
SaveStack(String) - Constructor for class deconvolutionlab.output.SaveStack
 
saveStats(Stats) - Method in class deconvolution.algorithm.Algorithm
 
saveStats(Stats, String) - Method in class deconvolution.algorithm.Algorithm
 
scales - Variable in class wavelets.AbstractWavelets
 
seconds(double) - Static method in class bilib.tools.NumFormat
 
set(double) - Method in class bilib.component.SpinnerRangeDouble
Set the value in the JSpinner with clipping in the range [min..max].
set(float) - Method in class bilib.component.SpinnerRangeFloat
Set the value in the JSpinner with clipping in the range [min..max].
set(int) - Method in class bilib.component.SpinnerRangeInteger
Set the value in the JSpinner with clipping in the range [min..max].
set(RealSignal) - Method in class signal.ComplexSignal
 
set(RealSignal, RealSignal) - Method in class signal.ComplexSignal
 
set3DArrayAsDouble(double[][][], double[][][]) - Method in class signal.ComplexSignal
 
set3DArrayAsDouble(double[][][]) - Method in class signal.RealSignal
 
setAction(Output.Action) - Method in class deconvolutionlab.output.Output
 
setAlgoName(String) - Method in class deconvolution.algorithm.Controller
 
setAlgorithm(Algorithm) - Method in class deconvolution.Deconvolution
 
setAlwaysDropDown(boolean) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Show the dropdown menu, if attached, even if the button part is clicked.
setApodization(Apodization) - Method in class deconvolution.algorithm.Algorithm
 
setApodization(Apodization) - Method in class deconvolution.algorithm.Controller
 
setArrowColor(Color) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Set the arrow color.
setArrowSize(int) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
sets the size of the arrow
setCell(int, int, String) - Method in class bilib.table.CustomizedTable
 
setCommand(String) - Method in class deconvolution.Deconvolution
 
setCommand(String) - Method in class deconvolutionlab.module.AbstractModule
 
setCommand(String) - Method in class deconvolutionlab.module.CommandModule
 
setCommand(String) - Method in class deconvolutionlab.module.LanguageModule
 
setConstraint(Constraint) - Method in class deconvolution.algorithm.Algorithm
 
setConstraint(Constraint) - Method in class deconvolution.algorithm.Controller
 
setController(Controller) - Method in class deconvolution.algorithm.Algorithm
 
setController(Controller) - Method in class deconvolution.Deconvolution
 
setDetail() - Method in class deconvolutionlab.system.AbstractMeter
 
setDetail() - Method in class deconvolutionlab.system.FFTMeter
 
setDetail() - Method in class deconvolutionlab.system.FileMeter
 
setDetail() - Method in class deconvolutionlab.system.JavaMeter
 
setDetail() - Method in class deconvolutionlab.system.MemoryMeter
 
setDetail() - Method in class deconvolutionlab.system.ProcessorMeter
 
setDetail() - Method in class deconvolutionlab.system.SignalMeter
 
setDisabledArrowColor(Color) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
sets the disabled arrow color
setEmbeddedInFrame(boolean) - Method in class deconvolution.Stats
 
setEpsilon(double) - Method in class deconvolution.algorithm.Algorithm
 
setEpsilon(double) - Method in class deconvolution.algorithm.Controller
 
setFFT(AbstractFFT) - Method in class deconvolution.algorithm.Algorithm
 
setFFT(AbstractFFT) - Method in class deconvolution.algorithm.Controller
 
setFilename(String) - Static method in class deconvolutionlab.Config
 
setFormat(String) - Method in class bilib.component.SpinnerRangeDouble
Set the format of the numerical value.
setFormat(String) - Method in class bilib.component.SpinnerRangeFloat
Set the format of the numerical value.
setFormat(String) - Method in class bilib.component.SpinnerRangeInteger
Set the format of the numerical value.
setImage(BufferedImage) - Method in class bilib.component.PanelImage
 
setImage(RealSignal) - Method in class deconvolution.Deconvolution
 
setImage(Image) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Sets the image to draw instead of the triangle.
setImagX(int, int, float[]) - Method in class signal.ComplexSignal
 
setImagXY(int, float[]) - Method in class signal.ComplexSignal
 
setImagY(int, int, float[]) - Method in class signal.ComplexSignal
 
setImagZ(int, int, float[]) - Method in class signal.ComplexSignal
 
setIncrement(double) - Method in class bilib.component.SpinnerRangeDouble
Set the incremental step.
setIncrement(float) - Method in class bilib.component.SpinnerRangeFloat
Set the incremental step.
setIncrement(int) - Method in class bilib.component.SpinnerRangeInteger
Set the incremental step.
setInterleaveXY(int, float[]) - Method in class signal.ComplexSignal
 
setInterleaveXYAtReal(int, float[]) - Method in class signal.RealSignal
 
setInterleaveXYZ(float[]) - Method in class signal.ComplexSignal
 
setInterleaveXYZAtReal(float[]) - Method in class signal.RealSignal
 
setInterleaveYX(int, float[]) - Method in class signal.ComplexSignal
 
setInterleaveZ(int, int, float[]) - Method in class signal.ComplexSignal
 
setIterationsMax(int) - Method in class deconvolution.algorithm.Controller
 
setLimit(double, double) - Method in class bilib.component.SpinnerRangeDouble
Set the minimal and the maximal limit.
setLimit(float, float) - Method in class bilib.component.SpinnerRangeFloat
Set the minimal and the maximal limit.
setLimit(int, int) - Method in class bilib.component.SpinnerRangeInteger
Set the minimal and the maximal limit.
setLocationLaunch(Point) - Static method in class deconvolution.DeconvolutionDialog
 
setMethodBinary(int) - Method in class bilib.tools.PsRandom
 
setMethodDecimal(int) - Method in class bilib.tools.PsRandom
 
setMethodInteger(int) - Method in class bilib.tools.PsRandom
 
setModel(RealSignal) - Static method in class signal.Constraint
 
setMonitors(Monitors) - Method in class deconvolution.algorithm.Algorithm
 
setMonitors(Monitors) - Method in class deconvolution.algorithm.Controller
 
setMultipleModulePanel(GroupedModulePanel) - Method in class deconvolutionlab.module.AbstractModule
 
setMultithreading(boolean) - Method in class deconvolution.algorithm.Controller
 
setName(String) - Method in class signal.Signal
 
setNormalizationPSF(double) - Method in class deconvolution.algorithm.Algorithm
 
setNormalizationPSF(double) - Method in class deconvolution.algorithm.Controller
 
setOptimizedMemoryFootprint(boolean) - Method in class deconvolution.algorithm.Algorithm
 
setOuts(ArrayList<Output>) - Method in class deconvolution.algorithm.Algorithm
 
setOuts(ArrayList<Output>) - Method in class deconvolution.algorithm.Controller
 
setPadding(Padding) - Method in class deconvolution.algorithm.Algorithm
 
setPadding(Padding) - Method in class deconvolution.algorithm.Controller
 
setParameters(double...) - Method in class deconvolution.algorithm.Algorithm
 
setParameters(double...) - Method in class deconvolution.algorithm.Convolution
 
setParameters(double...) - Method in class deconvolution.algorithm.FISTA
 
setParameters(double...) - Method in class deconvolution.algorithm.ICTM
 
setParameters(double...) - Method in class deconvolution.algorithm.Identity
 
setParameters(double...) - Method in class deconvolution.algorithm.ISTA
 
setParameters(double...) - Method in class deconvolution.algorithm.Landweber
 
setParameters(double...) - Method in class deconvolution.algorithm.LandweberPositivity
 
setParameters(double...) - Method in class deconvolution.algorithm.NaiveInverseFilter
 
setParameters(double...) - Method in class deconvolution.algorithm.NonStabilizedDivision
 
setParameters(double...) - Method in class deconvolution.algorithm.RegularizedInverseFilter
 
setParameters(double...) - Method in class deconvolution.algorithm.RichardsonLucy
 
setParameters(double...) - Method in class deconvolution.algorithm.RichardsonLucyTV
 
setParameters(double...) - Method in class deconvolution.algorithm.Simulation
 
setParameters(double...) - Method in class deconvolution.algorithm.StarkParker
 
setParameters(double...) - Method in class deconvolution.algorithm.TikhonovMiller
 
setParameters(double...) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
setParameters(double...) - Method in class deconvolution.algorithm.VanCittert
 
setParameters(String, String) - Method in class deconvolutionlab.dialog.SyntheticDialog
Set the command line parameters to the components of the user interface
setParameters(double[]) - Method in class signal.factory.Airy
 
setParameters(double[]) - Method in class signal.factory.Astigmatism
 
setParameters(double[]) - Method in class signal.factory.AxialDiffractionSimulation
 
setParameters(double[]) - Method in class signal.factory.BesselJ0
 
setParameters(double[]) - Method in class signal.factory.Constant
 
setParameters(double[]) - Method in class signal.factory.Cross
 
setParameters(double[]) - Method in class signal.factory.Cube
 
setParameters(double[]) - Method in class signal.factory.CubeSphericalBeads
 
setParameters(double[]) - Method in class signal.factory.Defocus
 
setParameters(double[]) - Method in class signal.factory.DirectionalDerivative
 
setParameters(double[]) - Method in class signal.factory.DirectionalMotionBlur
 
setParameters(double[]) - Method in class signal.factory.DoG
 
setParameters(double[]) - Method in class signal.factory.DoubleHelix
 
setParameters(double[]) - Method in class signal.factory.Gaussian
 
setParameters(double[]) - Method in class signal.factory.Impulse
 
setParameters(double[]) - Method in class signal.factory.Laplacian
 
setParameters(double[]) - Method in class signal.factory.Ramp
 
setParameters(double[]) - Method in class signal.factory.RandomLines
 
setParameters(double[]) - Method in class signal.factory.SignalFactory
 
setParameters(double[]) - Method in class signal.factory.Sinc
 
setParameters(double[]) - Method in class signal.factory.Sphere
 
setParameters(double[]) - Method in class signal.factory.Torus
 
setPath(String) - Method in class deconvolution.algorithm.Algorithm
 
setPath(String) - Method in class deconvolution.algorithm.Controller
 
setPath(String) - Method in class deconvolutionlab.output.Output
 
setPopupMenu(JPopupMenu) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Sets the JPopupMenu to be displayed, when the split part of the button is clicked.
setPreferredSize(int, int) - Method in class bilib.table.CustomizedTable
 
setProgress(double) - Static method in class signal.SignalCollector
 
setPSF(RealSignal) - Method in class deconvolution.Deconvolution
 
setRealX(int, int, float[]) - Method in class signal.ComplexSignal
 
setRealXY(int, float[]) - Method in class signal.ComplexSignal
 
setRealY(int, int, float[]) - Method in class signal.ComplexSignal
 
setRealZ(int, int, float[]) - Method in class signal.ComplexSignal
 
setReference(RealSignal) - Method in class deconvolution.algorithm.Algorithm
 
setReference(RealSignal) - Method in class deconvolution.algorithm.Controller
 
setReference(RealSignal) - Method in class deconvolution.Deconvolution
 
setReference(boolean) - Method in class deconvolutionlab.module.ReferenceModule
 
setResiduMin(double) - Method in class deconvolution.algorithm.Algorithm
 
setResiduMin(double) - Method in class deconvolution.algorithm.Controller
 
setScale(int) - Method in class wavelets.AbstractWavelets
 
setScale(int) - Method in class wavelets.haar.HaarWavelets
 
setScale(int) - Method in class wavelets.spline.Spline1Wavelets
 
setScale(int) - Method in class wavelets.spline.Spline3Wavelets
 
setScale(int) - Method in class wavelets.spline.Spline5Wavelets
 
setSeed(long) - Method in class bilib.tools.PsRandom
 
setSelected(boolean) - Method in class bilib.component.BorderToggledButton
 
setSelectedAtColumn(int, String) - Method in class bilib.table.CustomizedTable
 
setSeparatorSpacing(int) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Sets the separatorSpacing.Separator spacing is the space above and below the separator( the line drawn when you hover your mouse over the split part of the button).
setSignal(RealSignal) - Method in class signal.RealSignal
 
setSlice(int, RealSignal) - Method in class signal.RealSignal
 
setSnapshot(int) - Method in class deconvolutionlab.output.Output
 
setSpace(int) - Method in class bilib.component.GridPanel
Specify the defaultSpace.
setSpace(int) - Method in class bilib.component.GridToolbar
Specify the defaultSpace.
setSplitWidth(int) - Method in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
Splitwidth is the width of the split part of the button.
setStats(Stats) - Method in class deconvolution.algorithm.Algorithm
 
setStats() - Method in class deconvolution.algorithm.Algorithm
 
setStats(String) - Method in class deconvolution.algorithm.Algorithm
 
setStats(Stats) - Method in class deconvolution.algorithm.Controller
 
setStatsMode(Stats.Mode, String) - Method in class deconvolution.algorithm.Controller
 
setSynopsis(String) - Method in class deconvolutionlab.module.AbstractModule
 
setSystem(boolean) - Method in class deconvolution.algorithm.Controller
 
setTimeLimit(double) - Method in class deconvolution.algorithm.Algorithm
 
setTimeLimit(double) - Method in class deconvolution.algorithm.Controller
 
setTitle(String) - Method in class deconvolutionlab.module.dropdownbuttons.ChooseImageDropDownButton
 
setTitle(String) - Method in class deconvolutionlab.module.dropdownbuttons.ShowImageDropDownButton
 
setValue(int, int, int, float[]) - Method in class signal.ComplexSignal
 
setVerbose(Verbose) - Method in class deconvolution.algorithm.Algorithm
 
setVerbose(Verbose) - Method in class deconvolution.algorithm.Controller
 
setVerbose(Verbose) - Method in class deconvolutionlab.monitor.Monitors
 
setVisible(JDialog, boolean) - Method in class deconvolutionlab.Imager
 
setVisible(JDialog, boolean) - Static method in class deconvolutionlab.Lab
 
setVisible(JPanel, String, int, int) - Static method in class deconvolutionlab.Lab
 
setVisible(JFrame) - Static method in class deconvolutionlab.Lab
 
setVisible(JDialog, boolean) - Method in class imagej.IJImager
 
setVisible(JDialog, boolean) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
setWavelets(String) - Method in class deconvolution.algorithm.Algorithm
 
setWavelets(String) - Method in class deconvolution.algorithm.FISTA
 
setWavelets(String) - Method in class deconvolution.algorithm.ISTA
 
setX(int, int, float[]) - Method in class signal.RealSignal
 
setXY(int, float[]) - Method in class signal.RealSignal
 
setXYZ(float[], float[]) - Method in class signal.ComplexSignal
 
setXYZ(float[]) - Method in class signal.RealSignal
 
setY(int, int, float[]) - Method in class signal.RealSignal
 
setZ(int, int, float[]) - Method in class signal.RealSignal
 
show(String, int, int) - Method in class bilib.table.CustomizedTable
 
show(String) - Method in class deconvolution.capsule.AbstractCapsule
 
show() - Method in class deconvolution.Stats
Show the stats table in a frame if it is not yet embedded in another frame.
show(ComplexSignal, String, ComplexComponent) - Method in class deconvolutionlab.Imager
 
show(RealSignal, String, Imager.Type, int) - Method in class deconvolutionlab.Imager
 
show(RealSignal, String, Imager.Type, int, ArrayList<Line2D.Double>) - Method in class deconvolutionlab.Imager
 
show(Monitors, ComplexSignal, String) - Static method in class deconvolutionlab.Lab
Displays a the module of complex signal.
show(RealSignal) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images.
show(RealSignal, String) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images.
show(Monitors, RealSignal) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images.
show(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images.
show(Monitors, RealSignal, String, Imager.Type) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images using a given type.
show(Monitors, RealSignal, String, Imager.Type, int) - Static method in class deconvolutionlab.Lab
Displays a real 3D signal a z-stack of images using a given type and shows the slice number z.
show(Monitors, RealSignal, String, Imager.Type, int, ArrayList<Line2D.Double>) - Static method in class deconvolutionlab.Lab
 
show(String) - Method in class deconvolutionlab.monitor.RunningMonitor
 
show(Object) - Static method in class DL2
 
show(RealSignal, String, Imager.Type, int) - Method in class imagej.IJImager
 
show(RealSignal, String, Imager.Type, int, ArrayList<Line2D.Double>) - Method in class imagej.IJImager
 
show(ComplexSignal, String, ComplexComponent) - Method in class imagej.IJImager
 
show(ComplexSignal, String, ComplexComponent) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
show(RealSignal, String, Imager.Type, int) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
show(RealSignal, String, Imager.Type, int, ArrayList<Line2D.Double>) - Method in class plugins.sage.deconvolutionlab.IcyImager
 
showFigure(RealSignal) - Static method in class deconvolutionlab.Lab
 
showFigure(RealSignal, String) - Static method in class deconvolutionlab.Lab
 
showFigure(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
ShowFigure - Class in deconvolutionlab.output
 
ShowFigure(String) - Constructor for class deconvolutionlab.output.ShowFigure
 
ShowImageDropDownButton - Class in deconvolutionlab.module.dropdownbuttons
 
ShowImageDropDownButton(String, String) - Constructor for class deconvolutionlab.module.dropdownbuttons.ShowImageDropDownButton
 
showMIP(RealSignal) - Static method in class deconvolutionlab.Lab
 
showMIP(RealSignal, String) - Static method in class deconvolutionlab.Lab
 
showMIP(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
ShowMIP - Class in deconvolutionlab.output
 
ShowMIP(String) - Constructor for class deconvolutionlab.output.ShowMIP
 
showMIP(Object) - Static method in class DL2
 
ShowOrtho - Class in deconvolutionlab.output
 
ShowOrtho(String) - Constructor for class deconvolutionlab.output.ShowOrtho
 
showOrthoview(RealSignal, int, int, int) - Static method in class deconvolutionlab.Lab
 
showOrthoview(RealSignal, String, int, int, int) - Static method in class deconvolutionlab.Lab
 
showOrthoview(Monitors, RealSignal, String, int, int, int) - Static method in class deconvolutionlab.Lab
 
showOrthoview(RealSignal) - Static method in class deconvolutionlab.Lab
 
showOrthoview(RealSignal, String) - Static method in class deconvolutionlab.Lab
 
showOrthoview(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
showOrthoview(Object) - Static method in class DL2
 
showPlanar(RealSignal) - Static method in class deconvolutionlab.Lab
 
showPlanar(RealSignal, String) - Static method in class deconvolutionlab.Lab
 
showPlanar(Monitors, RealSignal, String) - Static method in class deconvolutionlab.Lab
 
ShowPlanar - Class in deconvolutionlab.output
 
ShowPlanar(String) - Constructor for class deconvolutionlab.output.ShowPlanar
 
showPlanar(Object) - Static method in class DL2
 
ShowSeries - Class in deconvolutionlab.output
 
ShowSeries(String) - Constructor for class deconvolutionlab.output.ShowSeries
 
ShowStack - Class in deconvolutionlab.output
 
ShowStack(String) - Constructor for class deconvolutionlab.output.ShowStack
 
showStats() - Method in class deconvolution.algorithm.Algorithm
 
showStats(String) - Method in class deconvolution.algorithm.Algorithm
 
shrinkage(float, RealSignal, RealSignal, RealSignal) - Method in class wavelets.AbstractWavelets
 
signal - package signal
 
signal(String) - Method in class deconvolution.capsule.AbstractCapsule
 
Signal - Class in signal
This class is an abstract class to store a 3D signal in a float array 'data'.
Signal(String, int, int, int) - Constructor for class signal.Signal
 
signal.apodization - package signal.apodization
 
signal.factory - package signal.factory
 
signal.factory.complex - package signal.factory.complex
 
signal.padding - package signal.padding
 
signal.range - package signal.range
 
SignalCollector - Class in signal
 
SignalCollector() - Constructor for class signal.SignalCollector
 
SignalFactory - Class in signal.factory
 
SignalFactory() - Constructor for class signal.factory.SignalFactory
 
SignalFactory(double[]) - Constructor for class signal.factory.SignalFactory
 
SignalFactory.Worker - Class in signal.factory
 
SignalListener - Interface in signal
 
SignalMeter - Class in deconvolutionlab.system
 
SignalMeter(int) - Constructor for class deconvolutionlab.system.SignalMeter
 
SIM(Object, Object, double, double, double) - Static method in class DL2
 
SIM(Object, Object, double, double, double, String) - Static method in class DL2
 
SIM(Object, Object, Object, double, double, double, String) - Static method in class DL2
 
Simulation - Class in deconvolution.algorithm
 
Simulation(double, double, double) - Constructor for class deconvolution.algorithm.Simulation
 
SimulationPanel - Class in deconvolution.algorithm
 
SimulationPanel() - Constructor for class deconvolution.algorithm.SimulationPanel
 
Sinc - Class in signal.factory
 
Sinc(double, double, double) - Constructor for class signal.factory.Sinc
 
size(int, int, int) - Method in class signal.RealSignal
 
sizeModule() - Method in class deconvolutionlab.LabPanel
 
snr(RealSignal, RealSignal) - Static method in class signal.Assessment
 
Sphere - Class in signal.factory
 
Sphere(double, double) - Constructor for class signal.factory.Sphere
 
SpinnerRangeDouble - Class in bilib.component
This class extends the Java Swing JSpinner to make a easy to use spinner for double.
SpinnerRangeDouble(double, double, double, double) - Constructor for class bilib.component.SpinnerRangeDouble
Constructor.
SpinnerRangeDouble(double, double, double, double, String) - Constructor for class bilib.component.SpinnerRangeDouble
Constructor.
SpinnerRangeDouble(double, double, double, double, int) - Constructor for class bilib.component.SpinnerRangeDouble
Constructor.
SpinnerRangeFloat - Class in bilib.component
This class extends the Java Swing JSpinner to make a easy to use spinner for float.
SpinnerRangeFloat(float, float, float, float) - Constructor for class bilib.component.SpinnerRangeFloat
Constructor.
SpinnerRangeFloat(float, float, float, float, String) - Constructor for class bilib.component.SpinnerRangeFloat
Constructor.
SpinnerRangeFloat(float, float, float, float, int) - Constructor for class bilib.component.SpinnerRangeFloat
Constructor.
SpinnerRangeInteger - Class in bilib.component
This class extends the Java Swing JSpinner to make a easy to use spinner for integer.
SpinnerRangeInteger(int, int, int, int) - Constructor for class bilib.component.SpinnerRangeInteger
Constructor.
SpinnerRangeInteger(int, int, int, int, String) - Constructor for class bilib.component.SpinnerRangeInteger
Constructor.
SpinnerRangeInteger(int, int, int, int, int) - Constructor for class bilib.component.SpinnerRangeInteger
Constructor.
Spline1Wavelets - Class in wavelets.spline
 
Spline1Wavelets(int) - Constructor for class wavelets.spline.Spline1Wavelets
 
Spline3Wavelets - Class in wavelets.spline
 
Spline3Wavelets(int) - Constructor for class wavelets.spline.Spline3Wavelets
 
Spline5Wavelets - Class in wavelets.spline
 
Spline5Wavelets(int) - Constructor for class wavelets.spline.Spline5Wavelets
 
SplineFilter - Class in wavelets.spline
Spline wavelets transformation
SplineWaveletsTool - Class in wavelets.spline
 
SplineWaveletsTool(int, int) - Constructor for class wavelets.spline.SplineWaveletsTool
 
split - Variable in class deconvolution.capsule.AbstractCapsule
 
split(String) - Method in class deconvolutionlab.system.AbstractMeter
 
splitButtonActionListener - Variable in class deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.JSplitButton
 
SplitButtonActionListener - Interface in deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents
The listener interface for receiving action events.
splitButtonClicked(ActionEvent) - Method in interface deconvolutionlab.module.dropdownbuttons.gpl.swingcomponents.SplitButtonActionListener
Invoked when split part is clicked.
sqr() - Method in class signal.RealSignal
 
sqrt() - Method in class signal.RealSignal
 
StarkParker - Class in deconvolution.algorithm
 
StarkParker(int, double) - Constructor for class deconvolution.algorithm.StarkParker
 
StarkParkerPanel - Class in deconvolution.algorithm
 
StarkParkerPanel() - Constructor for class deconvolution.algorithm.StarkParkerPanel
 
start(RealSignal) - Method in class deconvolution.algorithm.Controller
Call one time at the beginning of the algorithms
startAsynchronousTimer(String, long) - Method in class deconvolution.capsule.AbstractCapsule
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.FISTAPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.ICTMPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.ISTAPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.LandweberPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.LandweberPositivityPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.RegularizedInverseFilterPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.RichardsonLucyPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.RichardsonLucyTVPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.StarkParkerPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.TikhonovMillerPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
stateChanged(ChangeEvent) - Method in class deconvolution.algorithm.VanCittertPanel
 
stateChanged(ChangeEvent) - Method in class deconvolutionlab.LabPanel
 
stateChanged(ChangeEvent) - Method in class deconvolutionlab.module.AlgorithmModule
 
stateChanged(ChangeEvent) - Method in class deconvolutionlab.module.ComputationModule
 
stateChanged(ChangeEvent) - Method in class deconvolutionlab.module.ControllerModule
 
stateChanged(ChangeEvent) - Method in class deconvolutionlab.module.PreprocessingModule
 
Stats - Class in deconvolution
 
Stats(Stats.Mode, String) - Constructor for class deconvolution.Stats
 
Stats.Mode - Enum in deconvolution
 
StatusMonitor - Class in deconvolutionlab.monitor
 
StatusMonitor(JProgressBar) - Constructor for class deconvolutionlab.monitor.StatusMonitor
 
stopAsynchronousTimer() - Method in class deconvolution.capsule.AbstractCapsule
 
store() - Static method in class deconvolutionlab.Config
 
subtract(ComplexSignal, ComplexSignal) - Static method in class signal.Operations
 
subtract(RealSignal, RealSignal, RealSignal) - Static method in class signal.Operations
 
subtract(RealSignal, RealSignal) - Static method in class signal.Operations
 
sumarize() - Static method in class signal.SignalCollector
 
swap() - Method in class signal.ComplexSignal
 
synthesis(RealSignal, RealSignal) - Method in class wavelets.AbstractWavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.AbstractWavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.haar.HaarWavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline1Wavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline3Wavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.spline.Spline5Wavelets
 
synthesis1(RealSignal, RealSignal) - Method in class wavelets.spline.SplineWaveletsTool
 
SyntheticDialog - Class in deconvolutionlab.dialog
 
SyntheticDialog(ArrayList<SignalFactory>) - Constructor for class deconvolutionlab.dialog.SyntheticDialog
 
SystemInfo - Class in deconvolutionlab.system
 
SystemUsage - Class in deconvolutionlab.system
 
SystemUsage() - Constructor for class deconvolutionlab.system.SystemUsage
 

T

table - Variable in class deconvolutionlab.module.AbstractImageSelectionModule
 
table - Variable in class deconvolutionlab.system.AbstractMeter
 
TableMonitor - Class in deconvolutionlab.monitor
 
TableMonitor(int, int) - Constructor for class deconvolutionlab.monitor.TableMonitor
 
Test - Class in plugins.sage.deconvolutionlab
 
Test() - Constructor for class plugins.sage.deconvolutionlab.Test
 
threaded - Variable in class deconvolution.algorithm.Algorithm
 
thresholdSoft(float, float) - Method in class signal.RealSignal
Applies a soft threshold (in-place processing)
TikhonovMiller - Class in deconvolution.algorithm
 
TikhonovMiller(int, double, double) - Constructor for class deconvolution.algorithm.TikhonovMiller
 
TikhonovMillerPanel - Class in deconvolution.algorithm
 
TikhonovMillerPanel() - Constructor for class deconvolution.algorithm.TikhonovMillerPanel
 
TikhonovRegularizedInverseFilter - Class in deconvolution.algorithm
 
TikhonovRegularizedInverseFilter(double) - Constructor for class deconvolution.algorithm.TikhonovRegularizedInverseFilter
 
TikhonovRegularizedInverseFilterPanel - Class in deconvolution.algorithm
 
TikhonovRegularizedInverseFilterPanel() - Constructor for class deconvolution.algorithm.TikhonovRegularizedInverseFilterPanel
 
time(double) - Static method in class bilib.tools.NumFormat
 
times(float) - Method in class signal.ComplexSignal
 
times(ComplexSignal) - Method in class signal.ComplexSignal
 
times(RealSignal) - Method in class signal.RealSignal
Multiplies by a signal pixelwise (in-place processing)
times(float) - Method in class signal.RealSignal
Multiplies by a scalar factor (in-place processing)
timesConjugate(ComplexSignal) - Method in class signal.ComplexSignal
 
TM(Object, Object, double, double, double) - Static method in class DL2
 
TM(Object, Object, double, double, double, String) - Static method in class DL2
 
TM(Object, Object, Object, double, double, double, String) - Static method in class DL2
 
toByte() - Method in class deconvolutionlab.output.Output
 
toFloat() - Method in class deconvolutionlab.output.Output
 
toPercent(String) - Static method in class bilib.tools.NumFormat
 
toPercent(double) - Static method in class bilib.tools.NumFormat
 
Torus - Class in signal.factory
 
Torus(double) - Constructor for class signal.factory.Torus
 
toShort() - Method in class deconvolutionlab.output.Output
 
toString() - Method in class deconvolution.algorithm.Algorithm
 
toString() - Method in class deconvolution.CommandToken
 
toString() - Method in class deconvolutionlab.output.Output
 
toString() - Method in class signal.apodization.Apodization
 
toString() - Method in class signal.ComplexSignal
 
toString() - Method in class signal.padding.Padding
 
toString() - Method in class signal.RealSignal
 
toStringMonitor() - Method in class deconvolution.algorithm.Controller
 
toStringPath() - Method in class deconvolution.algorithm.Controller
 
toStringStats() - Method in class deconvolution.Stats
 
TRIF(Object, Object, double) - Static method in class DL2
 
TRIF(Object, Object, double, String) - Static method in class DL2
 
TRIF(Object, Object, Object, double, String) - Static method in class DL2
 
TukeyApodization - Class in signal.apodization
 
TukeyApodization(double) - Constructor for class signal.apodization.TukeyApodization
 

U

UniformApodization - Class in signal.apodization
 
UniformApodization() - Constructor for class signal.apodization.UniformApodization
 
uniqueIntegerArray(int, int) - Method in class bilib.tools.PsRandom
 
uniqueIntegerArray(int) - Method in class bilib.tools.PsRandom
 
update(ArrayList<String[]>) - Method in class bilib.table.CustomizedTable
Replaces all the content of the table by a content private as list of String[].
update(RealSignal, RealSignal, double, RealSignal) - Method in class deconvolution.algorithm.FISTA
 
update(RealSignal, RealSignal, double, RealSignal) - Method in class deconvolution.algorithm.ISTA
 
update() - Method in class deconvolution.capsule.AbstractCapsule
 
update() - Method in class deconvolution.capsule.AlgorithmCapsule
 
update() - Method in class deconvolution.capsule.ImageCapsule
 
update() - Method in class deconvolution.capsule.PSFCapsule
 
update() - Method in class deconvolution.capsule.RecapCapsule
 
update() - Method in class deconvolution.capsule.ReportCapsule
 
update() - Method in class deconvolution.capsule.ResourcesCapsule
 
update() - Method in class deconvolutionlab.module.AbstractImageSelectionModule
 
update() - Method in class deconvolutionlab.module.ImageModule
 
update() - Method in class deconvolutionlab.module.LanguageModule
 
update() - Method in class deconvolutionlab.module.OutputModule
 
update() - Method in class deconvolutionlab.module.PSFModule
 
update() - Method in class deconvolutionlab.module.ReferenceModule
 
update() - Method in class deconvolutionlab.module.ResourcesModule
 
update() - Method in class deconvolutionlab.system.AbstractMeter
 
update() - Method in class deconvolutionlab.system.FFTMeter
 
update() - Method in class deconvolutionlab.system.FileMeter
 
update() - Method in class deconvolutionlab.system.JavaMeter
 
update() - Method in class deconvolutionlab.system.MemoryMeter
 
update() - Method in class deconvolutionlab.system.ProcessorMeter
 
update() - Method in class deconvolutionlab.system.RuntimeInfoPanel
 
update() - Method in class deconvolutionlab.system.SignalMeter
 
update() - Method in class deconvolutionlab.system.SystemInfo
 
updateFromSlider() - Method in class deconvolution.RegularizationPanel
 
updateFromText() - Method in class deconvolution.RegularizationPanel
 
updateModules() - Static method in class deconvolution.Command
 
url - Static variable in class deconvolutionlab.Constants
 

V

value - Variable in class signal.apodization.AbstractApodization
 
valueOf(String) - Static method in enum deconvolution.algorithm.Constraint
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolution.Deconvolution.Finish
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolution.DeconvolutionDialog.Module
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolution.DeconvolutionDialog.State
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolution.Stats.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.Imager.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.monitor.Verbose
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.output.Output.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.output.Output.Dynamic
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.output.Output.View
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum deconvolutionlab.Platform
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum signal.ComplexComponent
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum signal.Constraint.Mode
Returns the enum constant of this type with the specified name.
values() - Static method in enum deconvolution.algorithm.Constraint
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolution.Deconvolution.Finish
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolution.DeconvolutionDialog.Module
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolution.DeconvolutionDialog.State
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolution.Stats.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.Imager.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.monitor.Verbose
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.output.Output.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.output.Output.Dynamic
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.output.Output.View
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum deconvolutionlab.Platform
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum signal.ComplexComponent
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum signal.Constraint.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
VanCittert - Class in deconvolution.algorithm
 
VanCittert(int, double) - Constructor for class deconvolution.algorithm.VanCittert
 
VanCittertPanel - Class in deconvolution.algorithm
 
VanCittertPanel() - Constructor for class deconvolution.algorithm.VanCittertPanel
 
Verbose - Enum in deconvolutionlab.monitor
 
verbose - Static variable in class matlab.Converter
 
version - Static variable in class deconvolutionlab.Constants
 

W

wasCancel() - Method in class deconvolutionlab.dialog.OutputDialog
 
wasCancel() - Method in class deconvolutionlab.dialog.PatternDialog
 
wasCancel() - Method in class deconvolutionlab.dialog.SyntheticDialog
 
wasCancel() - Method in class imagej.IJImager.Dialog
 
wavelets - package wavelets
 
Wavelets - Class in wavelets
 
Wavelets() - Constructor for class wavelets.Wavelets
 
wavelets.haar - package wavelets.haar
 
wavelets.spline - package wavelets.spline
 
WebBrowser - Class in bilib.tools
 
WebBrowser() - Constructor for class bilib.tools.WebBrowser
 
weibullArray(double, double, double, int) - Method in class bilib.tools.PsRandom
 
WelchApodization - Class in signal.apodization
 
WelchApodization() - Constructor for class signal.apodization.WelchApodization
 
widthGUI - Static variable in class deconvolutionlab.Constants
 
widthLaunchGUI - Static variable in class deconvolutionlab.Constants
 
windowActivated(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowActivated(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowActivated(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowActivated(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowActivated(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowActivated(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowActivated(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowClosed(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowClosed(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowClosed(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowClosed(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowClosed(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowClosed(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowClosed(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowClosing(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowClosing(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowClosing(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowClosing(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowClosing(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowClosing(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowClosing(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowDeactivated(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowDeactivated(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowDeactivated(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowDeactivated(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowDeactivated(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowDeactivated(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowDeactivated(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowDeiconified(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowDeiconified(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowDeiconified(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowDeiconified(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowDeiconified(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowDeiconified(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowDeiconified(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowIconified(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowIconified(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowIconified(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowIconified(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowIconified(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowIconified(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowIconified(WindowEvent) - Method in class imagej.IJImager.Dialog
 
windowOpened(WindowEvent) - Method in class deconvolution.DeconvolutionDialog
 
windowOpened(WindowEvent) - Method in class deconvolutionlab.dialog.BatchDialog
 
windowOpened(WindowEvent) - Method in class deconvolutionlab.dialog.PatternDialog
 
windowOpened(WindowEvent) - Method in class deconvolutionlab.dialog.SyntheticDialog
 
windowOpened(WindowEvent) - Method in class deconvolutionlab.LabDialog
 
windowOpened(WindowEvent) - Method in class deconvolutionlab.system.SystemInfo
 
windowOpened(WindowEvent) - Method in class imagej.IJImager.Dialog
 
Worker(RealSignal) - Constructor for class signal.factory.SignalFactory.Worker
 

X

xc - Variable in class signal.factory.SignalFactory
 

Y

y - Variable in class deconvolution.algorithm.Algorithm
y is the input signal of the deconvolution.
yc - Variable in class signal.factory.SignalFactory
 

Z

zc - Variable in class signal.factory.SignalFactory
 
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