EPFL
 Biomedical Imaging GroupSTI
EPFL
  Publications
English only   BIG > Publications > Biological Images


 CONTENTS
 Home Page
 News & Events
 People
 Publications
 Tutorials and Reviews
 Research
 Demos
 Download Algorithms

 DOWNLOAD
 PDF not available
 PS not available
 All BibTeX References

Image Processing and Analysis of Biological Images

M. Unser, D. Sage, M. Jacob, E. Meijering, P. Thévenaz

Live Cell Imaging Workshop, Lausanne VD, Swiss Confederation, October 9-10, 2002.



We will provide an overview of our research efforts relating to the processing and analysis of biological images. In particular, we will present a novel particle tracking algorithm and show some preliminary results on fluorescence microscopy images. We will also describe a detector of filament-like structures that outperforms the classical differential approaches (gradient or Hessian-based). Another most relevant development is a graph search technique that permits an efficient, semi-automatic tracking of dendrites in neurons. Finally, we will discuss our spline-based approach to image registration that is well suited for the alignment of time-lapse images (2D and 3D), or for creating mosaics. Most of our algorithms are available as JAVA plug-ins for the public domain ImageJ software, which was developed by Wayne Rasband from the NIH.


@INPROCEEDINGS(http://bigwww.epfl.ch/publications/unser0205.html,
AUTHOR="Unser, M. and Sage, D. and Jacob, M. and Meijering, E. and
        Th{\'{e}}venaz, P.",
TITLE="Image Processing and Analysis of Biological Images",
BOOKTITLE="Live Cell Imaging Workshop",
YEAR="2002",
editor="",
volume="",
series="",
pages="",
address="Lausanne VD, Swiss Confederation",
month="October 9-10,",
organization="",
publisher="",
note="")

© 2002 EPFL. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from EPFL.
This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.