Single-Molecule Localization Microscopy  •  Software Benchmarking

Second edition of the challenge focussed on 3D

The challenge has been presented at Single Molecule Localization Microscopy Symposium (SMLMS) at Lausanne, Switzerland, August 28-30, 2016. This edition will be focussed on 3D localization techniques, astigmatism, biplane, or double-helix.


Software Density 2D AS DH BP Open Access Challenge Contact Team
3D-DAOSTORMLD+HDOKOKPython / COpen accessAuthorHazen Babcock
Harvard University (Zhuang group), Cambridge, MA, USA
3D-WTMLD+HDOKOKOKOKStand-aloneShigeo Watanabe
Hamamatsu Photonics K.K., Japan
ADCGLD+HDOKJuliaOpen accessAuthorNicholas Boyd
University of Berkeley, USA
ALOHAHDOKMatlabAuthorJunhong Min and Kyong Jin
Bio-Imaging and Signal Processing Lab, KAIST, Korea
B-recsLD+HDOKOKOKC / ImageJOpen accessAuthorHerve Rouault
Janelia Farm Research Campus, HHMI, USA
CEL0-STORMHDOKMatlabLaterAuthorEmmanuel Soubies
INRIA Sophia Antipolis, France
CsplineLD+HDOKOKOKPython / COpen accessAuthorHazen Babcock
Harvard University (Zhuang group), Cambridge, MA, USA
Easy-DHPSFLD+HDOKMatlabOpen AccessAuthorAlex von Diezmann, Camille Bayas, and W. E. Moerner
Stanford University Department of Chemistry, Stanford, USA
FALCONHDOKOKMatlabOpen accessAuthorJunhong Min and Jong Chul Ye
Bio-Imaging and Signal Processing Lab, KAIST, Korea
FIRESTORMLD+HDOKMatlabAccess on requestAuthorThomas Vomhof and Jochen Reichel
Institute of Biophysics, Ulm University, Germany
SFP Estimator (FGPA)LD+HDOKStand-alone (QT C++)Open-accessAuthorManfred Kirchgessner and Frederik Gruell
Heidelberg University, Germany
L1HLD+HDOKPythonOpen accessAuthorHazen Babcock
Harvard University, Cambridge, MA, USA
LocalizerLDOKOKIgorOpen accessExpertDepartment of Chemistry, University of Leuven, Belgium
MaLiangLDOKImageJOpen accessAuthorZhen-li Huang and Yujie Wang
Wuhan Laboratory for Optoelectronics, HUST, Wuhan, China
MIAToolLDOKOKOKOKJavaOpen accessAuthorR. Velmurugan, A. V. Abraham, and R. J. Ober
Texas A&M University, College Station, Texas, USA
mlePALMLD+HDOKOKMatlabAutthorLaboratory of Nanoscale Biology, EPFL, Swiss
OctaneLD+HDOKImageJOpen accessExpertUniversity of Connecticut Health Center, USA
PALMERHDOKImageJOpen accessZhen-li Huang and Yi-na Wang
Wuhan Laboratory for Optoelectronics, HUST, Wuhan, China
PeakFitLD+HDOKImageJOpen accessAuthorAlex Herbert
Genome Damage and Stability Centre, University of Sussex, UK
QC-STORMLD+HDOKOKOKImageJLaterAuthorLuchang Li
Wuhan National Laboratory, China
QuickPALMLDOKOKImageJOpen accessAuthorRicardo Henriques
Institut Pasteur, Paris, France
RainSTORMLD+HDOKOKOKMatlabOpen accessAuthorG. Tamas and J. Sinko
University of Cambridge UK & University of Szeged, Hungary
RapidSTORMLD+HDOKOKStand-aloneOpen accessAuthorSteve Wolter, Markus Sauer
Biotechnologie and Biophysik, University of Wurzburg, Germany
SMAPLD+HDOKOKOKOkMatlabAuthorJonas Ries
EMBL, Heidelberg, Germany
SMfitLD+HDOKJulia / PythonAuthorHayato Ikoma
Electrical Engineering Department, Stanford University, USA
SMolPhotLD+HDOKOKPython / COpen accessAuthorMartti Pars and Ardi Loot
University of Tartu, Institute of Physics, Estonia
SOLAR_STORMLD+HDOKMatlab / CAuthorYoon J. Jung and Nikta Fakhri
Fakri Lab, MIT, USA
STORMChaserLD+HDOKMatlabAuthorAnna Archetti
Institute of Physics, EPFL, Swiss
ThunderSTORMLD+HDOKOKOKImageJOpen accessAuthorMartin Ovesny, Guy Hagen and Pavel Krizek
Charles University, Prague, Czech
TVSTORMLD+HDOKOKMatlabAuthorJiaqing Huang
The Ohio State University, Columbus, OH, USA
WaveTracerLD+HDOKOKMetamorphCommercialAuthorAdel Kechkar and Jean-Baptiste Sibarita
University of Bordeaux and Institute for Neuroscience, France
WTMLD+HDOKStand-aloneAuthorShigeo Watanabe
Hamamatsu Photonics K.K., Japan

© 2017 Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
Last update: 31 Mar 2017