Emmanuel Soubies

Postdoctoral Researcher at EPFL, Biomedical Imaging Group

Journals

  • Efficient Inversion of Multiple-Scattering Model for Optical Diffraction Tomography
    Optics Express 25-18, pp. 21786-21800, 2017 (Editors' Pick).
    Emmanuel Soubies, Thanh-An Pham and Michael Unser. [arXiv] [Journal]
  • A Unified View of Exact Continuous Penalties for l2-l0 Minimization.
    SIAM Journal on Optimization 27-3, pp. 2034-2060, 2017.
    Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [Hal]
  • A Continuous Exact l0 Penalty (CEL0) for Least-Squares Regularized Problem.
    SIAM Journal on Imaging Science 8-3, pp. 1574-1606, 2015.
    Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [Hal] [Erratum]

Conferences

  • Quelles Relaxations Continues pour le Critère l2-l0? Colloque GRETSI, 2017.
    Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [Hal]
  • GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems. Proc. COSI, 2017.
    Michael Unser, Emmanuel Soubies, Ferréol Soulez, Michael McCann and Laurène Donati. [pdf]
  • High Density Molecule Localization for Super-Resolution Microscopy Using CEL0 Based Sparse Approximation. Proc. ISBI, 2017.
    Simon Gazagnes, Emmanuel Soubies and Laure Blanc-Féraud. [Hal]
  • A Framework for Multi-Angle TIRF Microscope Calibration. Proc. ISBI, 2016.
    Emmanuel Soubies, Sébastien Schaub, Agata Radwanska, Ellen Van Obberghen-Schilling, Laure Blanc-Féraud and Gilles Aubert. [Hal]
  • L0-Optimization for Channel and DOA Sparse Estimation. Proc. CAMSAP, 2015.
    Adilson Chinatto, Emmanuel Soubies, Cynthia Junqueira, João M. T. Romano, Pascal Larzabal, Jean-Pierre Barbot and Laure Blanc-Féraud. [Hal]
  • Seuillage CEL0 pour la Minimisation l2-l0 : Comparaisons avec IHT. Colloque GRETSI, 2015.
    Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [Hal]
  • CEL0: A Continuous Alternative to l0 Penalty. SPARS, 2015.
    Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [Hal]
  • Cells Detection Using Segmentation Competition. Proc. ISBI, 2015.
    Emmanuelle Poulain, Sylvain Prigent, Emmanuel Soubies and Xavier Descombes. [Hal]
  • Sparse Reconstruction from Multi-Angle TIRF Microscopy. Proc ICIP, 2014.
    Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [Hal]
  • A 3D Model with Shape Prior Information for Biological Structures Reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy. Proc. ISBI, 2014.
    Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [Hal]
  • A 3D Segmentation Algorithm for Ellipsoidal Shapes. Application to Nuclei Extraction. Proc. ICPRAM, 2013. Emmanuel Soubies, Pierre Weiss and Xavier Descombes. [Hal]

Book sections

  • Graph-Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging.
    In Pattern Recognition Applications and Methods. A. Fred & M. De Marisco (eds.), Springer, 2015.
    Emmanuel Soubies, Pierre Weiss and Xavier Descombes. (Revised Selected Papers ICPRAM 2013) [pdf]

Thesis

  • Sur Quelques Problèmes de Reconstruction en Imagerie MA-TIRF et en Optimisation Parcimonieuse par Relaxation Continue Exacte de Critères Pénalisés en Norme-l0. PhD Thesis, Université Nice Sophia-Antipolis, October 2016. [Manuscript]

Talks

  • SIAM Conference on Imaging Science, June 2018, Bologna (Italy):
       Exact continuous relaxations for the l0-regularized least-squares criteria.
  • Télécom Paristech, November 2017, Paris (France):
       Exact continuous relaxations for the l0-regularized least-squares criteria.
  • Colloque GRETSI, September 2017, Juan-Les-Pins (France):
       Quelles Relaxations Continues pour le Critère l2-l0? [poster]
  • Congrès SMAI, June 2017, Ronce les Bains (France):
       Vers une vue unifiée des relaxations continues exactes du critère l2-l0.
  • Conference ISBI, April 2016, Prague (Czech Republic):
       A framework for Multi-Angle TIRF microscope calibration.
  • SMATI (joint seminar between MAP5 and LTCI), December 2015, LTCI, Paris (France):
       The Continuous Exact l0 penalty: An alternative to l0-norm.
  • Séminaires signal - apprentissage, November 2015, CMI, Marseille (France):
       The Continuous Exact l0 penalty: An alternative to l0-norm.
  • Workshop Axe Physique du Vivant de l'UNS, September 2015, Nice (France):
       High resolution imaging using Multi-Angle TIRF microscopy.
  • Colloque GRETSI, September 2015, Lyon (France):
       Seuillage CEL0 pour la minimisation l2-l0 : Comparaisons avec IHT.
  • Workshop SPARS, July 2015, Cambridge (UK):
       CEL0: a continuous alternative to l0 penalty. [poster]
  • MICA Days, December 2014, Nice (France):
       From single TIRF to Multiple-Angle TIRF. How to improve axial resolution.
  • Conference ICIP, October 2014, Paris (France):
       Sparse reconstruction from Multiple-Angle TIRF Microscopy.
  • Conference ISBI, May 2014, Bejing (China):
       Biological structures reconstruction using MA-TIRFM. A 3D model with shape prior information.

Emmanuel Soubies - 2014