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BIOMEDICAL IMAGING GROUP (BIG)
Laboratoire d'imagerie biomédicale (LIB)
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Students Projects

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Tracking cells with snake algorithms and Kalman filter

2007
Master Semester Project
Project: 00143

00143
Parametric snakes form an efficient class of deformable contours and are characterized efficiently in terms of spline basis functions. Snakes are optimized by optimizing the parameters under a set of local image constraints. Snakes are very useful for characterizing objects in a given image. In particular, snakes find interesting applications in processing biological images. The objective of this project is to write snake optimization ImageJ software based on a user-defined shape library - a library of shapes from which a user may choose and optimize. Different biological objects have different shapes and therefore, the snake shape library must be fairly exhaustive and include the frequently encountered object shapes. Requirements: basic knowledge of image processing, expertise in ImageJ. Existing resources: E-spline based snake optimization software in ImageJ. Deliverables: Java code and a project report.
  • Supervisors
  • Chandra Sekhar Seelamantula, chandrasekhar.seelamantula@epfl.ch, 351 35, BM 4.142
  • Michael Unser, michael.unser@epfl.ch, 021 693 51 75, BM 4.136
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