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A
absolute(double[])
- Static method in class denoise.
Operations
absolute(double[], double[])
- Static method in class denoise.
Operations
actionPerformed(ActionEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the actionPerformed for the ActionListener.
add(double[], double[], double[], int)
- Static method in class denoise.
Operations
Perform the addition of two arrays.
add(double[], double[])
- Static method in class denoise.
Operations
add(double[], double[], double[])
- Static method in class denoise.
Operations
add(double[], double, double[])
- Static method in class denoise.
Operations
add(int[], int)
- Static method in class denoise.
Operations
add(double[], double)
- Static method in class denoise.
Operations
averageSubStack(ImageWare, int, int)
- Static method in class denoise.
Operations
B
BSPLINE
- Static variable in class denoise.
Filters
C
complexMultiplication(double[], double[], double[], double[])
- Static method in class denoise.
Operations
computeBlkMean(double[][], double[], int, int, int)
- Static method in class denoise.
Operations
computeBlkVar(ImageWare, double[], int, int)
- Static method in class denoise.
Operations
computeMedian(ImageWare)
- Static method in class denoise.
Operations
computeMode(double[])
- Static method in class denoise.
Operations
convolve3(double[], double[])
- Static method in class denoise.
Operations
convolveFIR(double[], double[], int)
- Method in class denoise.
Convolver
Convolution with a Finite Impulse Response (FIR) filter.
convolveFIR2(ImageWare, double[][])
- Static method in class denoise.
Operations
convolveIIR(double[], double[])
- Method in class denoise.
Convolver
Convolve with with an Infinite Impluse Response filter (IIR)
convolveIIR2(double[], double, double)
- Method in class denoise.
Convolver
Convolve a 1D signal with a Infinite Impluse Response 2nd order (IIR2) Note: Only with the mirror (on bounds) boundary conditions.
Convolver
- Class in
denoise
Convolver(int)
- Constructor for class denoise.
Convolver
Constructor of the class Convolver.
createIndex(int)
- Static method in class denoise.
Operations
createIndex(int, int)
- Static method in class denoise.
Operations
createParent(ImageWare, boolean[])
- Static method in class denoise.
Operations
crop2D(ImageWare, int, int, int[])
- Static method in class denoise.
Operations
D
denoise
- package denoise
DenoiseDialog
- Class in
denoisegui
DenoiseDialog()
- Constructor for class denoisegui.
DenoiseDialog
Constructor creates the dialog box.
denoisegui
- package denoisegui
DenoiseLowpass(ImageWare, double[], int)
- Static method in class denoise.
Operations
Denoising
- Class in
denoise
Denoising(ImageWare, double[], double[], double[], boolean, int, int)
- Constructor for class denoise.
Denoising
Constructor of the class Denoising.
DenoisingThread
- Class in
denoise
DenoisingThread(ImageWare, ImageWare, double, double, double[], int[], int, int[], boolean)
- Constructor for class denoise.
DenoisingThread
divide(double[], double[])
- Static method in class denoise.
Operations
divide(double, double[])
- Static method in class denoise.
Operations
doInverse3D(ImageWare, int[], int, double, double)
- Static method in class denoise.
Operations
doMultiframePURELET(ImageWare, ImageWare, int[], double[], int)
- Static method in class denoise.
Operations
doTransform3D(ImageWare, int[], int, double, double, int, ImageWare)
- Static method in class denoise.
Operations
Perform the inverse wavelet transform (synthesis) using Fourier domain for filtering.
DUAL
- Static variable in class denoise.
Filters
E
estimateNoiseParameters()
- Method in class denoise.
Denoising
Method for automatic (either global or framewise) noise parameters estimation.
estimateNoiseParams(ImageWare, int)
- Static method in class denoise.
Operations
F
FFT1D
- Class in
denoise
FFT1D(int)
- Constructor for class denoise.
FFT1D
fill(double[], double)
- Static method in class denoise.
Operations
Filters
- Class in
denoise
Filters(int, int, double, double, int)
- Constructor for class denoise.
Filters
Prepare the computation the spectrum of the desired filter with the same number of samples as the signal to filter.
G
generateAnalysisFilters()
- Method in class denoise.
Filters
Generate all the analysis filter.
generateSynthesisFilters()
- Method in class denoise.
Filters
Generate all the synthesis filter.
getAdjacentIndex(int, int, int)
- Static method in class denoise.
Operations
getAlpha()
- Method in class denoise.
Denoising
Method to get the value of the detector gain for each frame/slice.
getBlocks(double[][], int, int)
- Static method in class denoise.
Operations
getBlocks(ImageWare, int, int)
- Static method in class denoise.
Operations
getBoundaryConditions()
- Method in class denoise.
Convolver
Get the boundary conditions.
getDelta()
- Method in class denoise.
Denoising
Method to get the value of the detector offset for each frame/slice.
getImaginaryHighpassFilter()
- Method in class denoise.
Filters
Return the imaginary parts of the Highpass filter.
getImaginaryLowpassFilter()
- Method in class denoise.
Filters
Return the imaginary parts of the Lowpass filter.
getIndex(double[], double[], int)
- Static method in class denoise.
Operations
getMax(double[])
- Static method in class denoise.
Operations
getMaxThread()
- Method in class denoise.
Denoising
Method to get the maximum number of parallel threads launched.
getMean(double[])
- Static method in class denoise.
Operations
getMedian(double[])
- Static method in class denoise.
Operations
getOutput()
- Method in class denoise.
Denoising
Method to get the output of the denoising task.
getParameters()
- Method in class denoisegui.
DenoiseDialog
Get all parameters of the dialog box.
getPixels(ImageWare)
- Static method in class denoise.
Operations
getProgress()
- Method in class denoise.
Denoising
Method to get the level of progression during the denoising process.
getRealHighpassFilter()
- Method in class denoise.
Filters
Return the real parts of the Highpass filter.
getRealLowpassFilter()
- Method in class denoise.
Filters
Return the real parts of the Lowpass filter.
getSigma()
- Method in class denoise.
Denoising
Method to get the standard deviation of the additive-white-Gaussian-noise (AWGN) for each frame/slice.
getStop()
- Method in class denoise.
Denoising
Method to detect whether the denoising process has been stopped by the user.
getSum(double[])
- Static method in class denoise.
Operations
getTolerance()
- Method in class denoise.
Convolver
Get the tolerance.
H
HAAR
- Static variable in class denoise.
Filters
I
interqDist(double[])
- Static method in class denoise.
Operations
inverse(double[], double[], int, int)
- Method in class denoise.
FFT1D
Select the algorithm to perform the Inverse FFT1D, Cooley-Tukey or Mix.
isOdd(int)
- Static method in class denoise.
Operations
Test if n is odd.
itemStateChanged(ItemEvent)
- Method in class denoisegui.
DenoiseDialog
Actualize the dialog box in case of Automatic checkbox state changes.
M
maxDyadicIters(int)
- Static method in class denoise.
Operations
Find the maximum number of dyadic iterations for a signal of size N.
MIRROR
- Static variable in class denoise.
Convolver
multiply(double[], double[])
- Static method in class denoise.
Operations
multiply(double[], double[], double[])
- Static method in class denoise.
Operations
multiply(double[], double, double[])
- Static method in class denoise.
Operations
multiply(double[], double)
- Static method in class denoise.
Operations
multiply(int[], int)
- Static method in class denoise.
Operations
multiplyAndConjugateSpecial(double[], double[], double[], double[], double[], double[], int, int)
- Static method in class denoise.
Operations
Perform the filtering in Fourier domain and conjugate.
multiplyAndRound(double[], double, double[])
- Static method in class denoise.
Operations
multiplyAndSum(double[], double[])
- Static method in class denoise.
Operations
multiplySpecial(double[], double[], double[], double[], double[], double[], int, int)
- Static method in class denoise.
Operations
Perform the filtering in Fourier domain.
N
numOfDyadicIters(int, int)
- Static method in class denoise.
Operations
O
Operations
- Class in
denoise
Operations()
- Constructor for class denoise.
Operations
ORTHONORMAL
- Static variable in class denoise.
Filters
P
ParametersThread
- Class in
denoise
ParametersThread(ImageWare, double[], double[], double[], int[], boolean, boolean)
- Constructor for class denoise.
ParametersThread
perform()
- Method in class denoise.
Denoising
Method for parallel denoising of multidimensional images.
PERIODIC
- Static variable in class denoise.
Convolver
PURELETmultishrink(ImageWare, ImageWare, boolean[], double[], int)
- Static method in class denoise.
Operations
putIndexedValues(double[], double[], int[], int)
- Static method in class denoise.
Operations
Q
quickSort(double[], int[])
- Static method in class denoise.
Operations
quickSort(double[], int[], int, int)
- Static method in class denoise.
Operations
R
restrict(double[], double)
- Static method in class denoise.
Operations
restrictArray(int[], int, int)
- Static method in class denoise.
Operations
restrictArray(double[], int, int)
- Static method in class denoise.
Operations
robustMeanEstimate(double[], int)
- Static method in class denoise.
Operations
robustVarEstimate(double[])
- Static method in class denoise.
Operations
run()
- Method in class denoise.
DenoisingThread
run()
- Method in class denoise.
ParametersThread
run()
- Method in class denoisegui.
DenoiseDialog
run()
- Method in class denoisegui.
Timer
S
setAlpha(double[])
- Method in class denoise.
Denoising
Method to set the value of the detector gain for each frame/slice.
setBoundaryConditions(int)
- Method in class denoise.
Convolver
Set the boundary conditions.
setCycleSpins(int)
- Method in class denoise.
Denoising
Method to set the number of cycle-spin(s) for reducing potential blocking artifacts.
setDelta(double[])
- Method in class denoise.
Denoising
Method to set the value of the detector offset for each frame/slice.
setFramewise(boolean)
- Method in class denoise.
Denoising
Method to set the type of noise parmeters estimation (global or framewise).
setLog(boolean)
- Method in class denoise.
Denoising
Method to display some messages related to the current denoising task.
setMultiFrame(int)
- Method in class denoise.
Denoising
Method to set the number of adjacent frames/slices for multi-frame/slices denoising.
setSigma(double[])
- Method in class denoise.
Denoising
Method to set the standard deviation of the additive-white-Gaussian-noise (AWGN) for each frame/slice.
setStop(boolean)
- Method in class denoise.
Denoising
Method to interrupt the current denoising task.
setTolerance(int)
- Method in class denoise.
Convolver
Set the tolerance.
smooth(ImageWare, double)
- Static method in class denoise.
Operations
smoothGaussian1D(double[], double, int)
- Static method in class denoise.
Operations
Implements a gaussian smooth filter with a parameter sigma.
smoothx(ImageWare, double)
- Static method in class denoise.
Operations
Gaussian smoothing along x
smoothy(ImageWare, double)
- Static method in class denoise.
Operations
Gaussian smoothing along y
smoothz(ImageWare, double)
- Static method in class denoise.
Operations
Gaussian smoothing along z
start()
- Method in class denoisegui.
Timer
stateChanged(ChangeEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the adjustmentValueChanged for the ChangeListener.
stop()
- Method in class denoisegui.
Timer
subtract(double[], double[])
- Static method in class denoise.
Operations
subtract(double[], double)
- Static method in class denoise.
Operations
subtract(double[], double[], double[])
- Static method in class denoise.
Operations
subtract(double[], double, double[])
- Static method in class denoise.
Operations
swap(int[], int, int)
- Static method in class denoise.
Operations
swap(double[], int, int)
- Static method in class denoise.
Operations
symextend2D(ImageWare, int, int)
- Static method in class denoise.
Operations
symextend2D(ImageWare, int, int, int[])
- Static method in class denoise.
Operations
SYMLET4
- Static variable in class denoise.
Filters
SYMLET8
- Static variable in class denoise.
Filters
T
textValueChanged(TextEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the textValueChanged for the TexttListener.
Timer
- Class in
denoisegui
Timer(WalkBar, Denoising)
- Constructor for class denoisegui.
Timer
transform(double[], double[], int, int)
- Method in class denoise.
FFT1D
Select the algorithm to perform the FFT1D, Cooley-Tukey or Mix.
U
UNHAAR
- Static variable in class denoise.
Filters
W
weightFun(double[], int, double[])
- Static method in class denoise.
Operations
windowActivated(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowActivated method for the WindowListener.
windowClosed(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowClosed method for the WindowListener.
windowClosing(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowClosing method for the WindowListener.
windowDeactivated(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowDeactivated method for the WindowListener.
windowDeiconified(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowDeiconified method for the WindowListener.
windowIconified(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowIconified method for the WindowListener.
windowOpened(WindowEvent)
- Method in class denoisegui.
DenoiseDialog
Implements the windowOpened method for the WindowListener.
wlsFit(double[], double[], int)
- Static method in class denoise.
Operations
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