Index

B

bestAttemptColor - Variable in class snake2D.Snake2DScale: This is the color with which this scale will be drawn if it is part of the optimal skin found so far in the course of the optimization.

closed - Variable in class snake2D.Snake2DScale: This flag is used to determine how to draw the outline of this scale.
currentAttemptColor - Variable in class snake2D.Snake2DScale: This is the color with which this scale will be drawn if it is part of the skin being currently examined in the course of the optimization.

energy() - Method in interface snake2D.Snake2D: The purpose of this method is to compute the energy of the snake.

filled - Variable in class snake2D.Snake2DScale: This flag is used to determine how to draw the interior of this scale.
frozen - Variable in class snake2D.Snake2DNode: Methods of the class Snake2DKeeper are allowed to modify Snake2DNode objects only if their frozen flag is set to false.

getEnergyGradient() - Method in interface snake2D.Snake2D: The purpose of this method is to compute the gradient of the snake energy with respect to the snake-defining nodes.
getNodes() - Method in interface snake2D.Snake2D: This method provides an accessor to the snake-defining nodes.
getScales() - Method in interface snake2D.Snake2D: The purpose of this method is to detemine what to draw on screen, given the current configuration of nodes.

hidden - Variable in class snake2D.Snake2DNode: Methods of the class Snake2DKeeper are allowed to interactively display (as a cross) the nodes stored in Snake2DNode objects only if their hidden flag is set to false.

interactAndOptimize(Snake2D, ImagePlus) - Method in class snake2D.Snake2DKeeper: This method allows the user to alternate between interactive guiding of the snake and automatic optimization under control of the class Snake2DKeeper.

setNodes(Snake2DNode[]) - Method in interface snake2D.Snake2D: This method provides a mutator to the snake-defining nodes.
setup(String, ImagePlus) - Method in class Snakuscule_
snake2D - package snake2D
Snake2D - Interface in snake2D: This interface encapsulates the number-crunching aspect of snakes.
Snake2DKeeper - Class in snake2D: This class encapsulates the interactive and managerial aspects of snakes.
Snake2DKeeper() - Constructor for class snake2D.Snake2DKeeper
Snake2DNode - Class in snake2D: This class is used to store the snake-defining parameters.
Snake2DNode(double, double) - Constructor for class snake2D.Snake2DNode: This constructor builds a point that is initially neither frozen nor hidden.
Snake2DNode(double, double, boolean, boolean) - Constructor for class snake2D.Snake2DNode: This constructor builds a point with the given initial values.
Snake2DScale - Class in snake2D: This class is used to store the scales that are used to draw the skin of the snake.
Snake2DScale() - Constructor for class snake2D.Snake2DScale: This constructor builds a scale with default values.
Snake2DScale(Color, Color, boolean, boolean) - Constructor for class snake2D.Snake2DScale: This constructor builds a scale with the provided colors and flags.
Snakuscule_ - Class in Unnamed Package
Snakuscule_() - Constructor for class Snakuscule_

toString() - Method in class snake2D.Snake2DNode: This method returns text-based information about this object.
toString() - Method in class snake2D.Snake2DScale: This method returns text-based information about this object.