Preprints
- D. Gambarotto, F. U. Zwettler, M. Cernohorska, D. Fortun, S. Borgers, J. Heine, J. G. Schloetel, M. Reuss, M. Unser, E.S. Boyden, M. Sauer, V. Hamel and P. Guichard. Imaging beyond the super-resolution limits using ultrastructure expansion microscopy (UltraExM).
biorXiv, 2018
- C.L. Chen, L. Hermans, M.C. Viswanathan, D. Fortun, M. Unser, A. Cammarato, M.H. Dickinson, P. Ramdya. Imaging neural activity in the ventral nerve cord of behaving adult Drosophila..
bioRxiv, 2018
Journal publications
- D. Fortun, M. Storath, D. Rickert, A. Weinmann, M. Unser. Fast piecewise-affine motion estimation without
Segmentation.
IEEE Transactions on Image Processing , In press, 2018
- D. Fortun, P. Guichard, V. Hamel, C.O.S. Sorzano, N. Banterle P. Gonczy, M. Unser. Reconstruction from multiple particles for 3D isotropic resolution in fluorescence microscopy.
IEEE Transactions on Medical Imaging , 37(5): 1235-1246, 2018
- D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, M. Unser. DeconvolutionLab2 : An Open-Source Software for Deconvolution Microscopy.
Methods , 115(15): 28-41, 2017
- D. Fortun, P. Bouthemy, C. Kervrann. A variational aggregation framework for patch-based optical flow estimation.
Journal of Mathematical Imaging and Vision, 56(2): 280-299, 2016
- D. Fortun, P. Bouthemy, C. Kervrann. Aggregation of local parametric candidates with exemplar-based occlusion handling for optical flow.
Computer Vision and Image Understanding, 145: 1-182, April 2016
- D. Fortun, P. Guichard, N. Chu, M. Unser, Reconstruction from Multiple Poses in Fluorescence Imaging: Proof of Concept.
IEEE Journal of Selected Topics in Signal Processing, 10(1): 61-70, February 2016.
- D. Fortun, P. Bouthemy, C. Kervrann. Optic flow modeling and computation: a survey.
Computer Vision and Image Understanding, 134: 1-21, May 2015
International Conferences
- D. Fortun, N. Debroux et C. Kervrann, Spatially-variant kernel for optical flow under low signal-tonoise
ratios.
International Conference on Computer Vision, Workshop on BioImage Computing, 2017
- D. Fortun, P. Guichard, N. Chu, M. Unser, Isotropic Resolution in Fluorescence Imaging by Single Particle Reconstruction.
IEEE International Symposium on Biomedical Imaging (ISBI), 2016
- D. Fortun, P. Bouthemy, C. Kervrann. Sparse aggregation framework for optical flow estimation.
International Conference on Scale Space and Variational Methods in Computer Vision (SSVM), 2015
- D. Fortun, C. Chen, P. Paul-Gilloteaux, F. Waharte, J. Salamero, C. Kervrann. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging.
IEEE European Signal Processing Conference (EUSIPCO), 2013
- D. Fortun, P. Bouthemy, P. Paul-Gilloteaux, C. Kervrann. Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging.
IEEE International Symposium on Biomedical Imaging (ISBI), 2013, Finalist for Best Student Paper Award
- D. Fortun, C. Kervrann. Semi-local variational optical flow estimation.
IEEE International Conference on Image Processing (ICIP), 2012
National Conferences
- D. Fortun, P. Guichard, N. Chu et M. Unser. Résolution isotropique en imagerie 3D de fluorescence par reconstruction de particule unique.
Colloque Reconnaissance de Forme et Inteligence Artificielle (RFIA) , 2016, Best Paper Award
- D. Fortun, P. Bouthemy, C. Kervrann. Agrégation d’estimations semi-locales pour le flot optique.
Colloque GRETSI Traitement du Signal et des Images, 2013
Abstracts
- D. Fortun, P. Guichard, V. Hamel, C.O.S. Sorzano, N.Banterle, P. Gonczy, M. Unser, Common multichannel fluorescence model reconstruction for protein localisation.
Microscopie fonctionnelle en biologie (MiFoBio), 2016
- C. Sieben, N. Banterle, K.M. Douglass, D. Fortun, P. Gonczy, S. Manley, smartMerging: An optimized workflow for visualizing localization microscopy data.
Single Molecule Localization Microscopy Symposium, 2016
- L. Donati, D. Fortun, D. Sage, M. Unser, Higher-order Total Variation Reconstruction for Structured Illumination Microscopy (SIM).
ZEISS Symposium on Optics in the Digital World, 2016
- N. Chu, R. Nussbaumer, L. Donati, D. Fortun, D. Sage, M. Unser, A Robust Reconstruction and Pattern Calibration Framework for Structured Illumination Microscopy.
Quantitative BioImaging Conference (QBIC), 2016
- D. Fortun, C. Chen, P. Paul-Gilloteaux, F. Waharte, J. Salamero, C. Kervrann. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging.
European Light Microscopy initiative (ELMI), 2013