Class MRITools_matt

java.lang.Object
  MriConvolutionKernels_
      MRITools_matt

All Implemented Interfaces:

ij.plugin.filter.ExtendedPlugInFilter, ij.plugin.filter.PlugInFilter

 class MRITools_matt
extends MriConvolutionKernels_

This class offers tools for the ImageJ plugin MriConvolutionKernels_ .

You'll be free to use this software for research purposes, but you should not redistribute it without our consent. In addition, we expect you to include a citation or acknowledgement whenever you present or publish results that are based on it.

Version:

June 03, 2008

Author:

Matthieu Guerquin-Kern

See Also:

MriConvolutionKernels_, KSpaceTrajectory, FFTTools_matt

Field Summary

Fields inherited from class MriConvolutionKernels_

imp, KSPACE_TRAJECTORY, TRAJECTORIES

Fields inherited from interface ij.plugin.filter.ExtendedPlugInFilter

KEEP_PREVIEW

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

MRITools_matt(int w, int h)
First constructor.

MRITools_matt(int w, int h, java.lang.String type)
Second constructor.

Method Summary

void	ComputeMriKernel(int refinement) Computes the kernel associated with the trajectory.
int	getHeight()
int	getWidth()
void	MRIConvolution(double[] Image_real, double[] Image_imag) Performs the convolution of an image with the kernel.
void	PlotKernel() Plots as an image the kernel stored in class fields.
void	showTraj() Calls internal KSpaceTrajectory function that displays trajectory.

Methods inherited from class MriConvolutionKernels_

run, setNPasses, setup, showDialog

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MRITools_matt

MRITools_matt(int w,
              int h)

First constructor.

Parameters:

w - width

h - height

MRITools_matt

MRITools_matt(int w,
              int h,
              java.lang.String type)

Second constructor.

Parameters:

w - width

h - height

type - type of the K-space trajectory

Method Detail

getWidth

public int getWidth()

Returns:

width

getHeight

public int getHeight()

Returns:

height

showTraj

public void showTraj()

Calls internal KSpaceTrajectory function that displays trajectory.

ComputeMriKernel

public void ComputeMriKernel(int refinement)

Computes the kernel associated with the trajectory. Stores the kernel in the class fields.

Parameters:

refinement - factor of refinement for the FT Cartesian grid

See Also:

FFTTools_matt

PlotKernel

public void PlotKernel()

Plots as an image the kernel stored in class fields.

MRIConvolution

public void MRIConvolution(double[] Image_real,
                           double[] Image_imag)

Performs the convolution of an image with the kernel.

Parameters:

Image_real - real part of the image

Image_imag - imaginary part of the image

See Also:

FFTTools_matt