Curriculum
Vitae
Nicolas
Chenouard received the Eng. degree in Bioinformatics from INSA
Lyon and the M.Sc. degree in Artificial Intelligence and Decision
from
the university Paris VI,
both
in
France,
in
2006. He then
pursuied Ph.D. degree from Oct. 2006 to Jan. 2010 in Image and Signal
Processing at TELECOM
ParisTech, Paris, France, under the direction of
Prof. Isabelle
Bloch and Dr. Jean-Christophe
Olivo-Marin. His research
has focused on statistical approaches to particle tracking in
microscopy images and their application to biological mechanisms
understanding. He defended his Ph.D. thesis, entitled 'Advances
in
probabilistic
particle
tracking', the 21th of January, 2010, at Institut Pasteur,
Paris. N. Chenouard received the IEEE EMBS France - SFGBM - AGBM best thesis price 2010 for his Ph.D. work.
Since February 2010 N. Chenouard is occupying a Post. Doc. position in
the
Biomedical Imaging Group, EPFL, with Prof. Michaël
Unser. His current work interests are steerable wavelet design,
wavelet learning, 3D image processing, biomedical image analysis.
N. Chenouard is a member of IEEE and of the IEEE Signal Processing Society. He is a regular reviewer for the IEEE Transactions on Medical Imaging and the IEEE Transactions on Signal Processing.
Detailed Curriculum Vitae
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Distinctions
- Best Ph.D. thesis price 2010 awarded by IEEE EMBS France (IEEE Engineering in Medicine and Biology Society France) - SFGBM (Société Française de Génie Biologique et Médical) - AGBM (Alliance pour le Génie Biologique et Médical) with the support of GDR STIC-Santé. Jury presided by Prof. Christian Roux.
Prix de thèse de doctorat 2010 EMBS "IEEE France Section" - SFGBM - AGBM avec le soutient du GDR STIC-Santé
Software development
Publications
Journal papers
2011
- Michael Unser, Nicolas Chenouard and Dimitri Van De Ville, "Steerable Pyramids and Tight Wavelet Frames in L2(ℝd)", IEEE Transactions on Image Processing, 2011 Oct;20(10):2705-21.
2009
- Nicolas Chenouard*,
Alexandre Dufour* and Jean-Christophe Olivo-Marin, “Tracking algorithms
chase down pathogens”, Journal of
Biotechnology, vol 4, pp 838-845, June 2009.
- Musa M. Mhlanga, Diana Bratu, Auguste Genovesio, Agata
Rybarska, Nicolas Chenouard,
Ulf Nehrbass, Jean-Christophe Olivo-Marin, “In vivo colocalisation of
oskar mRNA and trans-acting proteins revealed by quantitative imaging
of the drosophila oocyte”. PLoS ONE,
4(7)
:e6241,
July
2009.
- Karine Gousset, Edwin Schiff, Christelle Langevin, Zrinka
Marijanovic, Anna Caputo, Duncan Browman, Nicolas Chenouard, Fabrice de
Chaumont, Angelo Martino, Jost Enninga, Jean-Christophe Olivo-Marin,
Daniela Männel and Chiara Zurzolo. "Prions hijack tunnelling
nanotubes for intercellular spread.". Nature
Cell
Biology, vol 11, pp 328-336, March 2009.
- Emmanuelle Nicolas, Nicolas
Chenouard, Jean-Christophe Olivo-Marin and Antoine Guichet, "A
Dual Role for Actin and Microtubule Cytoskeleton in the Transport of
Golgi Units from the Nurse Cells to the Oocyte Across Ring Canals".
Molecular Biology of the Cell, vol 20, pp 556-568, January 2009.
Conference papers
2012
- Ricard Delgado-Gonzalo, Nicolas Chenouard and Michael Unser, "Fast parametric snakes for 3D microscopy", to be presented at the 9th IEEE International Symposium on BioImaging, ISBI 2012, Barcelona, Spain, 2012.
2011
- Nicolas Chenouard and Michael Unser, "Learning steerable wavelet frames", 9th IEEE International Conference on Sampling Therory and Applications, SAMPTA 2011, Singapore, 2011.
- Nicolas Chenouard and Michael Unser, "3D steerable wavelets and monogenic analysis for bioimaging", 8th IEEE International Symposium on BioImaging, ISBI 2011, Chicago, USA, 2011.
- Ricard Delgado-Gonzalo, Nicolas Chenouard and Michael Unser, "A new hybrid Bayesian-variational particle filter with application to mitotic cell tracking", 8th IEEE International Symposium on BioImaging, ISBI 2011, Chicago, USA, 2011.
2010
- Nicolas Chenouard, Johanna Buisson,
Isabelle Bloch, Philippe Bastin and Jean-Christophe Olivo-Marin, "Curvelet analysis of
Kymograph for tracking bi-directional particles in fluorecence
microscopy images". 17th IEEE
International Conference on Image Processing, ICIP 2010, Hong
Kong, China, 2010.
- Fabrice de Chaumont, Stephane Dallongeville, Nicolas Chenouard, Jean-Christophe
Olivo-Marin,, "Tracking multiple articulated objects using physics
engine: improvement using multi scale decomposition and quadtrees". 17th IEEE International Conference on
Image Processing, ICIP 2010, Hong Kong, China, 2010.
2009
- Nicolas Chenouard,
Isabelle Bloch and Jean-Christophe Olivo-Marin, "Multiple Hypothesis
Tracking in cluttered condition". 16th
IEEE
International
Conference
on
Image Processing, ICIP 2009,
Cairo, Egypt, 2009.
- Nicolas Chenouard,
Isabelle Bloch and Jean-Christophe Olivo-Marin, "Particle tracking in
fluorescent microscopy images improved by morphological source
separation". 16th IEEE International
Conference on Image Processing, ICIP 2009, Cairo, Egypt, 2009.
- Nicolas Chenouard,
Isabelle Bloch and Jean-Christophe Olivo-Marin, "Multiple Hypothesis
Tracking in microscopy images". 6th
IEEE International Symposium on BioImaging, ISBI 2009, Boston,
USA, 2009.
2008
- Nicolas Chenouard,
Samantha Vernhettes, Isabelle Bloch and Jean-Christophe Olivo-Marin,
"Morphological source separation for particle tracking in complex
biological environments". 19th IAPR
International Conference on Pattern Recognition, ICPR 2008,
Tampa, USA, 2008.
- Clovis Tauber, Pedro F. G. Rodriguez, Vincent Loriette, Nicolas Chenouard, Benoît
Dubertret and Jean-Christophe Olivo-Marin, "Fast and automatic
reconstruction of structured illumination microscopy images with
multiscale products". 19th
International Conference on Pattern Recognition, ICPR 2008,
Tampa, USA, 2008.
- Nicolas Chenouard,
Fabrice de Chaumont, Isabelle Bloch and Jean-Christophe Olivo-Marin.
"Improving 3D tracking in microscopy by joint estimation of kinetic and
image models". Proceedings of the
international conference on Medical Image Computing and
Computer-Assisted Intervention, MICCAI 2008, MIAAB workshop,
New-York, USA, 2008.
- Nicolas Chenouard,
Isabelle Bloch and Jean-Christophe Olivo-Marin, "Feature-aided particle
tracking". 15th IEEE International
Conference on Image Processing, ICIP 2008, San Diego, USA, 2008.
- Fabrice de Chaumont, Nicolas
Chenouard, Aurélie Mouret, Pierre Marie Lledo,
Jean-Christophe Olivo-Marin, “A multi-threaded program architecture for
an asynchronous and highly responsive GUI for automatic neuronal
survival quantification”, 1007-1010, 5th
IEEE
International
Symposium
on
Biomedical Imaging, ISBI 2008,
Paris, France, 2008.
- Bo Zhang, Nicolas
Chenouard, Jean-Christophe Olivo-Marin and Vannary Meas-Yedid,
“Statistical colocalization in biological imaging with false discovery
control”, 5th IEEE International
Symposium on Biomedical Imaging, ISBI 2008, Paris, France, 2008.
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