Graphic STI
logo EPFL
text EPFL
english only
Biomedical Imaging Group
3D Deconvolution Microscopy
BIG >  3D Deconvolution Microscopy
DECONVOLUTION

Outline

Open Software

» DeconvolutionLab2

» DeconvolutionLab

» PSF Generator

3D Reference Datasets

Benchmarking

Advanced Methods

Conditions of Use

Acknowledgment

BIG

Home

Research

Publications

Demos

Algorithms

Teaching

Synthetic hollow bars

These synthetic data consist of six parallel hollow bars. The images have been blurred using a theoretical microscopic PSF, and corrupted by Gaussian noise and Poisson noise with several signal to noise ratios (SNR = 15, 30 dB). The knowledge of the ground-truth allows one to quantatively compare the deconvolution tools.

Dataset Series of 2D images Single z-stack (TIF)
Uncorrupted stack (reference) Bars.zip Bars-stack.zip
Blurred and additive (low) noisy stack Bars-G10-P15.zip Bars-G10-P15-stack.zip
Blurred and additive (high) noisy stack Bars-G10-P30.zip Bars-G10-P30-stack.zip
PSF PSF-Bars.zip PSF-Bars-stack.zip

Statistics

Statistics Mininum Maximum Mean μ Standard deviation
Size Image size: 256x256 pixels, 128 z-slices, 1 channel, TIFF, 16-bits
Uncorrupted 0 65635 205.59 3664.85
G10-P15 0 65635 3527.12 4294.82
G10-P30 0 65635 5817.16 7514.97

PSF

FeatureValue
Type Widefield
Refractive index ni: 1.518
Numerical aperture NA: 1.4
Spherical aberration W040: 0
Wavelength lamda: 500 nm
Spatial resolution deltar: 100 nm
Axial resolution deltaz: 200 nm

Views

xy xy
Maximum intensity projection of the reference 3 Orthogonal views of the reference
 
xy xy
Maximum intensity projection of the corrupted data 3 Orthogonal views of the corrupted data
 
xy xy
Maximum intensity projection of the corrupted data 3 Orthogonal views of the corrupted data
 
xy xy
Maximum intensity projection of the PSF 3 Orthogonal views of the PSF