Graphic STI
logo EPFL
text EPFL
english only
Biomedical Imaging Group
3D Deconvolution Microscopy
BIG >  3D Deconvolution Microscopy
DECONVOLUTION

Outline

Open Software

» DeconvolutionLab2

» DeconvolutionLab

» PSF Generator

3D Reference Datasets

Benchmarking

Advanced Methods

Conditions of Use

Acknowledgment

BIG

Home

Research

Publications

Demos

Algorithms

Teaching

Cube of Spherical Beads

This datasets is a synthetic volume [128x128x128] of spherical beads. The beads are getting closer and closer in the Y and Z directions. The degraded signal and the ground-truth signals are provided and some results of algorithms upon a request by email.

Download

Object File Description Size Mb
Ground-truth ref.tif Reference signal 128x128x128, 32 bits 9Mb
Simulation signal.tif Degraded Signal 128x128x128, 32 bits 9Mb


Orthogonal views of the degraded signal

Orthogonal views - Landweber 50 iterations
Orthogonal views - Landweber 300 iterations

Reference

[1] D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, M. Unser, "DeconvolutionLab2 : An Open-Source Software for Deconvolution Microscopy" Methods, in press, 2017.

Conditions of use

You'll be free to use this software for research purposes, but you must not transmit and distribute it without our consent. In addition, you undertake to include a citation whenever you present or publish results that are based on it. EPFL makes no warranties of any kind on this software and shall in no event be liable for damages of any kind in connection with the use and exploitation of this technology.