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Transforms and Operators for Directional Bioimage Analysis: A Survey

Z. Püspöki, M. Storath, D. Sage, M. Unser

Advances in Anatomy, Embryology and Cell Biology, vol. 219, Focus on Bio-Image Informatics, W.H. De Vos, S. Munck, J.-P. Timmermans, Eds., Springer International Publishing, ch. 3, pp. 69-93, May 21, 2016.

We give a methodology-oriented perspective on directional image analysis and rotation-invariant processing. We review the state of the art in the field and make connections with recent mathematical developments in functional analysis and wavelet theory. We unify our perspective within a common framework using operators. The intent is to provide image-processing methods that can be deployed in algorithms that analyze biomedical images with improved rotation invariance and high directional sensitivity. We start our survey with classical methods such as directional-gradient and the structure tensor. Then, we discuss how these methods can be improved with respect to robustness, invariance to geometric transformations (with a particular interest in scaling), and computation cost. To address robustness against noise, we move forward to higher degrees of directional selectivity and discuss Hessian-based detection schemes. To present multiscale approaches, we explain the differences between Fourier filters, directional wavelets, curvelets, and shearlets. To reduce the computational cost, we address the problem of matching directional patterns by proposing steerable filters, where one might perform arbitrary rotations and optimizations without discretizing the orientation. We define the property of steerability and give an introduction to the design of steerable filters. We cover the spectrum from simple steerable filters through pyramid schemes up to steerable wavelets. We also present illustrations on the design of steerable wavelets and their application to pattern recognition.

AUTHOR="P{\"{u}}sp{\"{o}}ki, Z. and Storath, M. and Sage, D. and Unser,
TITLE="Transforms and Operators for Directional Bioimage Analysis: {A}
BOOKTITLE="Focus on Bio-Image Informatics",
PUBLISHER="Springer International Publishing",
editor="De Vos, W.H. and Munck, S. and Timmermans, J.-P.",
series="Advances in Anatomy, Embryology and Cell Biology",
month="May 21,",

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