Biomedical Imaging Group
Logo EPFL
    • Splines Tutorials
    • Splines Art Gallery
    • Wavelets Tutorials
    • Image denoising
    • ERC project: FUN-SP
    • Sparse Processes - Book Preview
    • ERC project: GlobalBioIm
    • The colored revolution of bioimaging
    • Deconvolution
    • SMLM
    • One-World Seminars: Representer theorems
    • A Unifying Representer Theorem
Follow us on Twitter.
Join our Github.
Masquer le formulaire de recherche
Menu
BIOMEDICAL IMAGING GROUP (BIG)
Laboratoire d'imagerie biomédicale (LIB)
  1. School of Engineering STI
  2. Institute IEM
  3.  LIB
  4.  Student Projects
  • Laboratory
    • Laboratory
    • Laboratory
    • People
    • Jobs and Trainees
    • News
    • Events
    • Seminars
    • Resources (intranet)
    • Twitter
  • Research
    • Research
    • Researchs
    • Research Topics
    • Talks, Tutorials, and Reviews
  • Publications
    • Publications
    • Publications
    • Database of Publications
    • Talks, Tutorials, and Reviews
    • EPFL Infoscience
  • Code
    • Code
    • Code
    • Demos
    • Download Algorithms
    • Github
  • Teaching
    • Teaching
    • Teaching
    • Courses
    • Student projects
  • Splines
    • Teaching
    • Teaching
    • Splines Tutorials
    • Splines Art Gallery
    • Wavelets Tutorials
    • Image denoising
  • Sparsity
    • Teaching
    • Teaching
    • ERC project: FUN-SP
    • Sparse Processes - Book Preview
  • Imaging
    • Teaching
    • Teaching
    • ERC project: GlobalBioIm
    • The colored revolution of bioimaging
    • Deconvolution
    • SMLM
  • Machine Learning
    • Teaching
    • Teaching
    • One-World Seminars: Representer theorems
    • A Unifying Representer Theorem

Students Projects

Proposals  On-Going  Completed  

Spatiotemporal Segmentation of Migrating Cells in Fluorescence Microscopy

Spring 2011
Master Semester Project
Project: 00210

00210
Cell dynamics is a crucial aspect of many biological processes with direct implication in human health. Changes in cellular morphology also play a critical role in the recognition of immune cells of antigens. To reliably assess the clinical potential of candidate drugs, it is usually necessary to analyze quantitatively the motion and morphology changes of cells under variety of experimental conditions. In these experiments, the temporal resolution is usually high. This allows one to display the time-lapse sequences of images as a 2D+t volumetric data. In the resulting volumes, tubes representing the migrating cells can be easily observed. The goal of this project is to implement an ImageJ plugin to extract these spatiotemporal tubes in order to quantify the movement and morphology of the corresponding cells. To achieve that, one strategy is to use an active contour algorithm (snake) combined with the 2D+t information available.
  • Supervisors
  • Ricard Delgado-Gonzalo, ricard.delgado@epfl.ch, 021 693 51 43, BM 4.141
  • Michael Unser, michael.unser@epfl.ch, 021 693 51 75, BM 4.136
  • Laboratory
  • Research
  • Publications
  • Code
  • Teaching
    • Courses
    • Student projects
Logo EPFL, Ecole polytechnique fédérale de Lausanne
Emergencies: +41 21 693 3000 Services and resources Contact Map Webmaster email

Follow EPFL on social media

Follow us on Facebook. Follow us on Twitter. Follow us on Instagram. Follow us on Youtube. Follow us on LinkedIn.
Accessibility Disclaimer Privacy policy

© 2023 EPFL, all rights reserved