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BIOMEDICAL IMAGING GROUP (BIG)
Laboratoire d'imagerie biomédicale (LIB)
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Learning the 3D structure of proteins with dictionary learning

Spring 2019
Bachelor Project
Master Semester Project
Master Diploma
Project: 00378

00378
Cryo-electron microscopy (cryo-EM) is a Nobel-prized technology that aims at characterizing the 3D structure of proteins at the atomic level. Recent advances in iterative reconstruction frameworks have opened the door to the introduction of learning into the reconstruction process. In that context, the goal of this project is twofold. First, the student will create a large training dataset of cryo-EM data from publicly available databases. Then, the student will train a dictionary learning algorithm with this dataset to learn the 3D structure of the proteins of interest. Good Matlab skills are a requisite for this project.
  • Supervisors
  • Laurène Donati, laurene.donati@epfl.ch, BM 4.139
  • Michael Unser, michael.unser@epfl.ch, 021 693 51 75, BM 4.136
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