BIOMEDICAL IMAGING GROUP (BIG)
Laboratoire d'imagerie biomédicale (LIB)

DeepImageJ: Bridging Deep Learning to ImageJ

E. Gomez-de-Mariscal, C. Garcia-Lopez-de-Haro, L. Donati, M. Unser, A. Munoz-Barrutia, D. Sage

Proceedings of the Seventeenth IEEE International Symposium on Biomedical Imaging (ISBI'20), Iowa City IA, USA, April 5-7, 2020, pp. 1308.

DeepImageJ1 is a user-friendly plugin that enables the generic used in FIJI/ImageJ of pre-trained deep learning (DL) models provided by their developers. The plugin acts as a software layer between TensorFlow and FIJI/ImageJ, runs on a standard CPU-based computer and can be used without any DL expertise. Beyond its direct use, we expect DeepImageJ to contribute to the spread and assessment of DL models in life-sciences applications and bioimage informatics.

1EGM and CGLH contributed equally to this work. 

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