Tracking cells with snake algorithms and Kalman filter
2007
Master Semester Project
Project: 00143

Parametric snakes form an efficient class of deformable contours and are characterized efficiently in terms of spline basis functions. Snakes are optimized by optimizing the parameters under a set of local image constraints. Snakes are very useful for characterizing objects in a given image. In particular, snakes find interesting applications in processing biological images. The objective of this project is to write snake optimization ImageJ software based on a user-defined shape library - a library of shapes from which a user may choose and optimize. Different biological objects have different shapes and therefore, the snake shape library must be fairly exhaustive and include the frequently encountered object shapes.
Requirements: basic knowledge of image processing, expertise in ImageJ.
Existing resources: E-spline based snake optimization software in ImageJ.
Deliverables: Java code and a project report.
- Supervisors
- Chandra Sekhar Seelamantula, chandrasekhar.seelamantula@epfl.ch, 351 35, BM 4.142
- Michael Unser, michael.unser@epfl.ch, 021 693 51 75, BM 4.136