

Preprints

A. Amini, R. Madani, M. Unser, "A Universal Formula for Generalized Cardinal BSplines," Applied and Computational Harmonic Analysis, in press.

J. Castelli, A. Depeursinge, B. De Bari, A. Devillers, R. de Crevoisier, J. Bourhis, J.O. Prior, "Metabolic Tumor Volume and Total Lesion Glycolysis in Oropharyngeal Cancer Treated with Definitive Radiotherapy—Which Threshold Is the Best Predictor of Local Control?," Clinical Nuclear Medicine, in press.

K.H. Jin, M.T. McCann, E. Froustey, M. Unser, "Deep Convolutional Neural Network for Inverse Problems in Imaging," IEEE Transactions on Image Processing, in press.

M.T. McCann, M. Unser, "HighQuality ParallelRay xRay CT Back Projection Using Optimized Interpolation," IEEE Transactions on Image Processing, in press.

P. Pad, F. Salehi, E. Celis, P. Thiran, M. Unser, "Dictionary Learning Based on Sparse Distribution Tomography," Proceedings of the ThirtyFourth International Conference on Machine Learning (ICML'17), Sydney, Commonwealth of Australia, August 611, 2017, in press.

D. Sage, F. Soulez, "Computational Methods for High Resolution 3D Fluorescence Microscopy," The BioImage Analysis Community Conference "Workflows and Open Tools" (NEUBIAS2020'17), Lisbon, Portuguese Republic, February 1217, 2017, in press.

D. Schmitter, P. GarcíaAmorena, M. Unser, "Smooth Shapes with Spherical Topology: Beyond Traditional Modeling, Efficient Deformation, and Interaction," Computational Visual Media, in press.

M. Storath, D. Rickert, M. Unser, A. Weinmann, "Fast Segmentation from Blurred Data In 3D Fluorescence Microscopy," IEEE Transactions on Image Processing, in press.

M. Storath, A. Weinmann, M. Unser, "JumpPenalized Least Absolute Values Estimation of Scalar or CircleValued Signals," Information and Inference: A Journal of the IMA, in press.

M. Unser, "Computational Bioimaging: How to Further Reduce Exposure and/or Increase Image Quality," Proceedings of the ThirtyNinth Annual International Conference of the IEEE Engineering in Medicine and Biology Society, in conjunction with the biennial Conference of the French Society of Biological and Medical Engineering (EMBC'17), Jejudo, Republic of Korea, July 1115, 2017, in press.

M. Unser, J. Fageot, J.P. Ward, "Splines Are Universal Solutions of Linear Inverse Problems with GeneralizedTV Regularization," SIAM Review, in press.
Prepublications

J. Fageot, V. Uhlmann, M. Unser, "Gaussian and Sparse Processes Are Limits of Generalized Poisson Processes," arXiv:1702.05003 [math.PR].

J. Fageot, M. Unser, "Scaling Limits of Solutions of SPDE Driven by Lévy White Noises," arXiv:1610.06711 [math.PR].

J. Fageot, M. Unser, J.P. Ward, "The nTerm Approximation of Periodic Generalized Lévy Processes," arXiv:1702.03335 [math.PR].

K.H. Jin, M.T. McCann, E. Froustey, M. Unser, "Deep Convolutional Neural Network for Inverse Problems in Imaging," arXiv:1611.03679 [cs.CV].

H.Q. Nguyen, E. Bostan, M. Unser, "Learning Convex Regularizers for Optimal Bayesian Denoising," arXiv:1705.05591 [cs.LG]

H.Q. Nguyen, M. Unser, "Approximation of NonDecaying Signals from ShiftInvariant Subspaces," arXiv:1705.05601 [math.FA]

V. Uhlmann, P. Ramdya, R. DelgadoGonzalo, R. Benton, M. Unser, "FlyLimbTracker: An Active Contour Based Approach for Leg Segment Tracking in Unmarked, Freely Behaving Drosophila," bioRxiv 089714.
Journal Articles
2017
Journal Articles • 2016 • 2017 • ↑Top

H.Q. Nguyen, M. Unser, "A Sampling Theory for NonDecaying Signals," Applied and Computational Harmonic Analysis, vol. 43, no. 1, pp. 7693, July 2017.

J. Fageot, A. Fallah, M. Unser, "Multidimensional Lévy White Noise in Weighted Besov Spaces," Stochastic Processes and Their Applications, vol. 127, no. 5, pp. 15991621, May 2017.

J. Castelli, A. Depeursinge, V. Ndoh, J.O. Prior, M. Ozsahin, A. Devillers, H. Bouchaab, E. Chajon, R. de Crevoisier, N. Scher, F. Jegoux, B. Laguerre, B. De Bari, J. Bourhis, "A PETBased Nomogram for Oropharyngeal Cancers," European Journal of Cancer, vol. 75, pp. 222230, April 2017.

Y.D. Cid, H. Müller, A. Platon, P.A. Poletti, A. Depeursinge, "3D Solid Texture Classification Using LocallyOriented Wavelet Transforms," IEEE Transactions on Image Processing, vol 26, no. 4, pp. 18991910, April 2017.

A. Depeursinge, Z. Püspöki, J.P. Ward, M. Unser, "Steerable Wavelet Machines (SWM): Learning Moving Frames for Texture Classification," IEEE Transactions on Image Processing, vol. 26, no. 4, pp. 16261636, April 2017.

H.Q. Nguyen, M. Unser, J.P. Ward, "Generalized Poisson Summation Formulas for Continuous Functions of Polynomial Growth," The Journal of Fourier Analysis and Applications, vol. 23, no. 2, pp. 442461, April 2017.

A. Badoual, D. Schmitter, V. Uhlmann, M. Unser, "Multiresolution Subdivision Snakes," IEEE Transactions on Image Processing, vol. 26, no. 3, pp. 11881201, March 2017.

B. Lazareff, J.P. Berger, J. Kluska, J.B. Le Bouquin, M. Benisty, F. Malbet, C. Koen, C. Pinte, W.F. Thi, O. Absil, F. Baron, A. Delboulbé, G. Duvert, A. Isella, L. Jocou, A. Juhasz, S. Kraus, R. Lachaume, F. Ménard, R. MillanGabet, J.D. Monnier, T. Moulin, K. Perraut, S. Rochat, F. Soulez, M. Tallon, É. Thiébaut, W. Traub, G. Zins, "Structure of Herbig AeBe Disks at the milliarcsecond Scale—A Statistical Survey in the H Band Using PIONIERVLTI," Astronomy & Astrophysics, Worldwide Astronomical and Astrophysical Research, vol. 599, paper no. A85, pp. 141, March 2017.

M. Storath, L. Demaret, P. Massopust, "Signal Analysis Based on Complex Wavelet Signs," Applied and Computational Harmonic Analysis, vol. 42, no. 2, pp. 199223, March 2017.

M. Rostykus, F. Soulez, M. Unser, C. Moser, "Compact Lensless Phase Imager," Optics Express, vol. 25, no. 4, pp. 44384445, February 20, 2017.

V. Petrenko, C. Saini, L. Giovannoni, C. Gobet, D. Sage, M. Unser, M.H. Masson, G. Gu, D. Bosco, F. Gachon, J. Philippe, C. Dibner, "Pancreatic α and βCellular Clocks Have Distinct Molecular Properties and Impact on Islet Hormone Secretion and Gene Expression," Genes & Development, vol. 31, no. 4, pp. 383398, February 15, 2017.

D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, M. Unser, "DeconvolutionLab2: An OpenSource Software for Deconvolution Microscopy," Methods—Image Processing for Biologists, vol. 115, pp. 2841, February 15, 2017.

J.C. Ye, J.M. Kim, K.H. Jin, K. Lee, "Compressive Sampling Using Annihilating FilterBased LowRank Interpolation," IEEE Transactions on Information Theory, vol. 63, no. 2, pp. 777801, February 2017.

K. Wasmer, P.M. Pochon, D. Sage, J.H. Giovanola, "Parametric Experimental Study and Design of Experiment Modelling of Sapphire Grinding," Journal of Cleaner Production, vol. 141, pp. 323335, January 10, 2017.

J. Fageot, M. Unser, J.P. Ward, "On the Besov Regularity of Periodic Lévy Noises," Applied and Computational Harmonic Analysis, vol. 42, no, 1, pp. 2136, January 2017.

S. Rangan, A.K. Fletcher, P. Schniter, U.S. Kamilov, "Inference for Generalized Linear Models via Alternating Directions and Bethe Free Energy Minimization," IEEE Transactions on Information Theory, vol. 63, no. 1, pp. 676697, January 2017.
2016
Journal Articles • 2015 • 2017 • ↑Top

H. Choi, K.H. Jin, "Fast and Robust Segmentation of the Striatum Using Deep Convolutional Neural Networks," Journal of Neuroscience Methods, vol. 274, pp. 146153, December 1, 2016.

J. Castelli, B. De Bari, A. Depeursinge, A. Simon, A. Devillers, G.R. Jimenez, J. Prior, M. Ozsahin, R. de Crevoisier, J. Bourhis, "Overview of the Predictive Value of Quantitative 18 FDG PET in Head and Neck Cancer Treated with Chemoradiotherapy," Critical Reviews in Oncology/Hematology, vol. 108, pp. 4051, December 2016.

P. Cirujeda, Y.D. Cid, H. Müller, D. Rubin, T.A. Aguilera, B.W. Loo Jr., M. Diehn, X. Binefa, A. Depeursinge, "A 3D RieszCovariance Texture Model for Prediction of Nodule Recurrence in Lung CT," IEEE Transactions on Medical Imaging, vol. 35, no. 12, pp. 26202630, December 2016.

K.H. Jin, D. Lee, J.C. Ye, "A General Framework for Compressed Sensing and Parallel MRI Using Annihilating Filter Based LowRank Hankel Matrix," IEEE Transactions on Computational Imaging, vol. 2, no. 4, pp. 480495, December 2016.

V. Uhlmann, S. Singh, A.E. Carpenter, "CPCHARM: SegmentationFree Image Classification Made Accessible," BMC Bioinformatics, vol. 17, no. 1, paper no. 51, December 2016.

R. Schorer, A. Badoual, B. Bastide, A. Vandebrouck, M. Licker, D. Sage, "A Feasability Study of Color Flow Doppler Vectorization for Automated Blood Flow Monitoring," Journal of Clinical Monitoring and Computing, article not assigned to an issue, pp. 19, November 12, 2016.

B. Meylan, P. Dogan, D. Sage, K. Wasmer, "A Simple, Fast and LowCost Method for in situ Monitoring of Topographical Changes and Wear Rate of a Complex TriboSystem Under Mixed Lubrication," Wear—An International Journal on the Science and Technology of Friction, Lubrication and Wear, vol. 364365, pp. 2230, October 15, 2016.

D. Fortun, P. Bouthemy, C. Kervrann, "A Variational Aggregation Framework for PatchBased Optical Flow Estimation," Journal of Mathematical Imaging and Vision, vol. 56, no. 2, pp. 280299, October 2016.

F. Soulez, É. Thiébaut, A. Schutz, A. Ferrari, F. Courbin, M. Unser, "Proximity Operators for Phase Retrieval," Applied Optics, vol. 55, no. 26, pp. 74127421, September 10, 2016.

M. Unser, J. Fageot, H. Gupta, "Representer Theorems for SparsityPromoting ℓ_{1} Regularization," IEEE Transactions on Information Theory, vol. 62, no. 9, pp. 51675180, September 2016.

J. Kluska, M. Benisty, F. Soulez, J.P. Berger, J.B. Le Bouquin, F. Malbet, B. Lazareff, É. Thiébaut, "A Disk Asymmetry in Motion Around the B[e] Star MWC158," Astronomy & Astrophysics, vol. 591, paper no. A82, July 2016.

A. Weinmann, L. Demaret, M. Storath, "MumfordShah and Potts Regularization for ManifoldValued Data," Journal of Mathematical Imaging and Vision, vol. 55, no. 3, pp. 428445, July 2016.

M.T. McCann, M. Nilchian, M. Stampanoni, M. Unser, "Fast 3D Reconstruction Method for Differential Phase Contrast xRay CT," Optics Express, vol. 24, no. 13, pp. 1456414581, June 27, 2016.

A. Badoual, D. Schmitter, M. Unser, "An InnerProduct Calculus for Periodic Functions and Curves," IEEE Signal Processing Letters, vol. 23, no. 6, pp. 878882, June 2016.

R. Schaer, H. Müller, A. Depeursinge, "Optimized Distributed Hyperparameter Search and Simulation for Lung Texture Classification in CT Using Hadoop," Journal of Imaging, vol. 2, no. 2, pp. 120, June 2016.

V. Uhlmann, J. Fageot, M. Unser, "Hermite Snakes with Control of Tangents," IEEE Transactions on Image Processing, vol. 25, no. 6, pp. 28032816, June 2016.

J. Barker, A. Hoogi, A. Depeursinge, D.L. Rubin, "Automated Classification of Brain Tumor Type in WholeSlide Digital Pathology Images Using Local Representative Tiles," Medical Image Analysis, vol. 30, pp. 6071, May 2016.

P. Pad, V. Uhlmann, M. Unser, "Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames," IEEE Transactions on Image Processing, vol. 25, no. 5, pp 22752287, May 2016.

Z. Püspöki, D. Sage, J.P. Ward, M. Unser, "SpotCaliper: Fast WaveletBased Spot Detection with Accurate Size Estimation," Bioinformatics, vol. 32, no. 8, pp. 12781280, April 15, 2016.

F. Arcadu, M. Nilchian, A. Studer, M. Stampanoni, F. Marone, "A Forward Regridding Method with Minimal Oversampling for Accurate and Efficient Iterative Tomographic Algorithms," IEEE Transactions on Image Processing, vol. 25, no. 3, pp. 12071218, March 2016.

S. Holden, D. Sage, "SuperResolution Fight Club," Nature Photonics, vol. 10, no. 3, pp. 152153, March 2016.

U.S. Kamilov, I.N. Papadopoulos, M.H. Shoreh, A. Goy, C. Vonesch, M. Unser, D. Psaltis, "Optical Tomographic Image Reconstruction Based on Beam Propagation and Sparse Regularization," IEEE Transactions on Computational Imaging, vol. 2, no. 1, pp. 5970, March 2016.

E. Bostan, E. Froustey, M. Nilchian, D. Sage, M. Unser, "Variational Phase Imaging Using the TransportofIntensity Equation," IEEE Transactions on Image Processing, vol. 25, no. 2, pp. 807817, February 2016.

D. Fortun, P. Guichard, N. Chu, M. Unser, "Reconstruction from Multiple Poses in Fluorescence Imaging: Proof of Concept," IEEE Journal of Selected Topics in Signal Processing, vol. 10, no. 1, pp. 6170, February 2016.

C. Kervrann, S.T. Acton, J.C. OlivoMarin, C.Ó.S. Sorzano, M. Unser, "Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging," IEEE Journal of Selected Topics in Signal Processing, vol. 10, no. 1, pp. 13, February 2016.

C. Kervrann, C.Ó.S. Sorzano, S.T. Acton, J.C. OlivoMarin, M. Unser, "A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy," IEEE Journal of Selected Topics in Signal Processing, vol. 10, no. 1, pp. 630, February 2016.

Z. Püspöki, V. Uhlmann, C. Vonesch, M. Unser, "Design of Steerable Wavelets to Detect Multifold Junctions," IEEE Transactions on Image Processing, vol. 25, no. 2, pp. 643657, February 2016.

D. Schmitter, R. DelgadoGonzalo, M. Unser, "A Family of Smooth and Interpolatory Basis Functions for Parametric Curve and Surface Representation," Applied Mathematics and Computation, vol. 272, no. 1, pp. 5363, January 1, 2016.

Z. Püspöki, J.P. Ward, D. Sage, M. Unser, "On the Continuous Steering of the Scale of Tight Wavelet Frames," SIAM Journal on Imaging Sciences, vol. 9, no. 3, pp. 10421062, 2016.

M. Storath, A. Weinmann, M. Unser, "Exact Algorithms for L^{1}TV Regularization of RealValued or CircleValued Signals," SIAM Journal on Scientific Computing, vol. 38, no. 1, pp A614A630, 2016.
2015
Journal Articles • 2015 • 2016

R. DelgadoGonzalo, D. Schmitter, V. Uhlmann, M. Unser, "Efficient Shape Priors for SplineBased Snakes," IEEE Transactions on Image Processing, vol. 24, no. 11, pp. 39153926, November 2015.

K. Hohm, M. Storath, A. Weinmann, "An Algorithmic Framework for MumfordShah Regularization of Inverse Problems in Imaging," Inverse Problems, vol. 31, no. 11, paper no. 115011, November 2015.

M. Nilchian, J.P. Ward, C. Vonesch, M. Unser, "Optimized KaiserBessel Window Functions for Computed Tomography," IEEE Transactions on Image Processing, vol. 24, no. 11, pp. 38263833, November 2015.

D. Schmitter, R. DelgadoGonzalo, M. Unser, "Trigonometric Interpolation Kernel to Construct Deformable Shapes for UserInteractive Applications," IEEE Signal Processing Letters, vol. 22, no. 11, pp. 20972101, November 2015.

J.P. Ward, P. Pad, M. Unser, "Optimal Isotropic Wavelets for Localized Tight Frame Representations," IEEE Signal Processing Letters, vol. 22, no. 11, pp. 19181921, November 2015.

Z. Püspöki, M. Unser, "TemplateFree WaveletBased Detection of Local Symmetries," IEEE Transactions on Image Processing, vol. 24, no. 10, pp. 30093018, October 2015.

P. Pad, M. Unser, "Optimality of OperatorLike Wavelets for Representing Sparse AR(1) Processes," IEEE Transactions on Signal Processing, vol. 63, no. 18, pp. 48274837, September 15, 2015.

E. Bostan, M. Unser, J.P. Ward, "DivergenceFree Wavelet Frames," IEEE Signal Processing Letters, vol. 22, no. 8, pp. 11421145, August 2015.

D. Sage, H. Kirshner, T. Pengo, N. Stuurman, J. Min, S. Manley, M. Unser, "Quantitative Evaluation of Software Packages for SingleMolecule Localization Microscopy," Nature Methods—Techniques for Life Scientists and Chemists, vol. 12, no. 8, pp. 717724, August 2015.

C. Conti, L. Romani, M. Unser, "EllipsePreserving Hermite Interpolation and Subdivision," Journal of Mathematical Analysis and Applications, vol. 426, no. 1, pp. 211227, June 1, 2015.

E. Bostan, S. Lefkimmiatis, O. Vardoulis, N. Stergiopulos, M. Unser, "Improved Variational Denoising of Flow Fields with Application to PhaseContrast MRI Data," IEEE Signal Processing Letters, vol. 22, no. 6, pp. 762766, June 2015.

U.S. Kamilov, I.N. Papadopoulos, M.H. Shoreh, A. Goy, C. Vonesch, M. Unser, D. Psaltis, "Learning Approach to Optical Tomography," Optica, vol. 2, no. 6, pp. 517522, June 2015.

U.S. Kamilov, I.N. Papadopoulos, M.H. Shoreh, D. Psaltis, M. Unser, "Isotropic InverseProblem Approach for TwoDimensional Phase Unwrapping," Journal of the Optical Society of America A, vol. 32, no. 6, pp. 10921100, June 2015.

D. Fortun, P. Bouthemy, C. Kervrann, "Optical Flow Modeling and Computation: A Survey," Computer Vision and Image Understanding, vol. 134, pp. 121, May 2015.

M. Nilchian, Z. Wang, T. Thuering, M. Unser, M. Stampanoni, "Spline Based Iterative Phase Retrieval Algorithm for xRay Differential Phase Contrast Radiography," Optics Express, vol. 23, no. 8, pp. 1063110642, April 20, 2015.

D. Sierociuk, T. Skovranek, M. Macias, I. Podlubny, I. Petras, A. Dzielinski, P. Ziubinski, "Diffusion Process Modeling by Using FractionalOrder Models," Applied Mathematics and Computation, vol. 257, pp. 211, April 15, 2015.

A. Weinmann, M. Storath, "Iterative Potts and BlakeZisserman Minimization for the Recovery of Functions with Discontinuities from Indirect Measurements," Proceedings of The Royal Society of London A: Mathematical, Physical and Engineering Sciences, vol. 471, no. 2176, paper no. 20140638, April 2015.

X. Cai, J.H. Fitschen, M. Nikolova, G. Steidl, M. Storath, "Disparity and Optical Flow Partitioning Using Extended Potts Priors," Information and Inference: A Journal of the IMA, vol. 4, no. 1, pp. 4362, March 2015.

P. Wachowicz, A. Chasapi, A. Krapp, E.C. del Rosario, D. Schmitter, D. Sage, M. Unser, I. Xenarios, J. Rougemont, V. Simanis, "Analysis of S. pombe SIN Protein Association to the SPB Reveals Two Genetically Separable States of the SIN," Journal of Cell Science, vol. 128, no. 4, pp. 741754, February 15, 2015.

J. Vaubourgeix, G. Lin, N. Dhar, N. Chenouard, X. Jiang, H. Botella, T. Lupoli, O. Mariani, G. Yang, O. Ouerfelli, M. Unser, D. Schnappinger, J. McKinney, C. Nathan, "Stressed Mycobacteria Use the Chaperone ClpB to Sequester Irreversibly Oxidized Proteins Asymmetrically Within and Between Cells," Cell Host & Microbe, vol. 17, no. 2, pp. 178190, February 11, 2015.

M. Storath, A. Weinmann, J. Frikel, M. Unser, "Joint Image Reconstruction and Segmentation Using the Potts Model," Inverse Problems, vol. 31, no. 2, paper no. 025003, February 2015.

H.Q. Nguyen, M.N. Do, "Downsampling of Signals on Graphs via Maximum Spanning Trees," IEEE Transactions on Signal Processing, vol. 63, no. 1, pp. 182191, January 1, 2015.

R. DelgadoGonzalo, V. Uhlmann, D. Schmitter, M. Unser, "Snakes on a Plane: A Perfect Snap for Bioimage Analysis," IEEE Signal Processing Magazine, vol. 32, no. 1, pp. 4148, January 2015.

J. Fageot, E. Bostan, M. Unser, "Wavelet Statistics of Sparse and SelfSimilar Images," SIAM Journal on Imaging Sciences, vol. 8, no. 4, pp. 29512975, 2015.

C. Granziera, A. Daducci, A. Donati, G. Bonnier, D. Romascano, A. Roche, M. Bach Cuadra, D. Schmitter, S. Klöppel, R. Meuli, A. von Gunten, G. Krueger, "A MultiContrast MRI Study of Microstructural Brain Damage in Patients with Mild Cognitive Impairment," NeuroImage: Clinical, vol. 8, pp. 631639, 2015.

M. Lee, Y. Han, J.P. Ward, M. Unser, J.C. Ye, "Interior Tomography Using 1D Generalized Total Variation. Part II: Multiscale Implementation," SIAM Journal on Imaging Sciences, vol. 8, no. 4, pp. 24522486, 2015.

S. Lefkimmiatis, A. Roussos, P. Maragos, M. Unser, "Structure Tensor Total Variation," SIAM Journal on Imaging Sciences, vol. 8, no. 2, pp. 10901122, 2015.

D. Schmitter, A. Roche, B. Maréchal, D. Ribes, A. Abdulkadir, M. Bach Cuadra, A. Daducci, C. Granziera, S. Klöppel, P. Maeder, R. Meuli, G. Krueger, "An Evaluation of VolumeBased Morphometry for Prediction of Mild Cognitive Impairment and Alzheimer's Disease," NeuroImage: Clinical, vol. 7, pp. 717, 2015.

C. Vonesch, F. Stauber, M. Unser, "Steerable PCA for RotationInvariant Image Recognition," SIAM Journal on Imaging Sciences, vol. 8, no. 3, pp. 18571873, 2015.

J.P. Ward, M. Lee, J.C. Ye, M. Unser, "Interior Tomography Using 1D Generalized Total Variation. Part I: Mathematical Foundation," SIAM Journal on Imaging Sciences, vol. 8, no. 1, pp. 226247, 2015.

A. Weinmann, M. Storath, L. Demaret, "The L^{1}Potts Functional for Robust JumpSparse Reconstruction," SIAM Journal on Numerical Analysis, vol. 53, no. 1, pp. 644673, 2015.
